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Advancements in Rubber Tree Genetic Engineering

Research explores CRISPR techniques to improve rubber tree yields and quality.

― 5 min read


Genetic Engineering inGenetic Engineering inRubber Treescould boost rubber production.Advancements in genetic modification
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Rubber trees, known scientifically as Hevea brasiliensis, are crucial for producing natural rubber used in various industries. As the demand for natural rubber grows worldwide, there is a need to improve rubber tree yields and the quality of rubber produced. This is essential to meet the diverse needs of different markets, including industrial and defense sectors.

Challenges in Rubber Tree Cultivation

Rubber trees are perennial plants that typically take 5-6 years to start flowering and producing seeds. This long wait can be a major hurdle for farmers and the rubber industry. Additionally, rubber trees have complex genetics, which means their flowering rates and seed production can vary widely due to environmental factors. In places like China, these challenges can be more pronounced, affecting the overall productivity of rubber tree cultivation.

Currently, new rubber tree varieties are mainly developed through breeding techniques that involve crossing two parent plants. However, this method often results in offspring with undesirable traits, limiting the potential for large-scale planting of new varieties. Most of the parent plants used in breeding come from a limited genetic pool, which reduces the genetic diversity needed to improve rubber tree yields effectively.

Due to these challenges, rubber tree breeding has not seen significant advancements in recent decades. This stagnation has led to a pressing need for innovative techniques, including genetic engineering, to create new and improved rubber tree varieties more quickly than traditional breeding methods.

The Promise of Genetic Engineering

One of the most promising techniques in genetic engineering is CRISPR/Cas9. This technology allows scientists to edit the genetic material of plants to enhance desired traits or suppress undesirable ones. While CRISPR has already been used successfully in numerous other plant species, rubber tree research has lagged behind. Previous attempts to apply CRISPR to rubber trees achieved limited success, primarily due to difficulties in transforming the tree's cells.

The main obstacle to effective Genetic Editing in rubber trees has been the immature transformation system. Historically, scientists used Agrobacterium-mediated transformation, which involves introducing new genes into the plant's cells. Although some rubber tree seedlings were produced using this technique, the success rates have been low due to various factors, including suboptimal growth conditions for the cells.

In recent efforts, scientists have turned to somatic Embryos as a more effective option for transformation. Somatic embryos are a type of plant cell that can develop into a full plant without going through the typical seed formation process. They have shown potential for improved transformation efficiency.

Improving Transformation Techniques

To enhance the transformation rates of rubber tree cells, researchers have been working on optimizing various factors, including the choice of antibiotics used to select transformed cells. Antibiotics are crucial for identifying the cells that have successfully incorporated new genetic material. Previous studies indicated that kanamycin was commonly used, but it had detrimental effects on the growth of the somatic embryos.

In this study, scientists tested different antibiotics and found that hygromycin was the most effective choice. By implementing a continuous selection strategy using hygromycin, they achieved a better balance of transforming cells while supporting their growth and development.

Generating Edited Rubber Tree Seedlings

The researchers successfully induced embryos that had taken up the editing gene. They sliced these embryos into smaller sections and subjected them to another round of embryogenesis. This process led to the production of many new embryos that showed signs of successful genetic editing.

A total of 33 new embryo generations were produced, and further genetic testing confirmed that nearly half of them were homozygous, meaning they had two identical copies of the edited gene. This was a significant improvement over previous attempts.

Achieving Visible Traits in Rubber Trees

From the edited embryos, several seedlings were regenerated. Among these, some displayed unique traits. Notably, some plants exhibited an albino phenotype, indicating successful editing of the gene responsible for chlorophyll production. By sequencing these plants' genomes, researchers confirmed that the gene editing resulted in homozygous mutations.

The research not only demonstrated the ability to produce genetically edited rubber trees but also highlighted the potential for these edited plants to pass on their traits to the next generation without further modifications.

Challenges and Future Directions

Even though the study achieved impressive results, challenges remain. For instance, many of the embryos initially transformed were chimeric, meaning they were composed of a mix of edited and unedited cells. This complexity makes it difficult to identify fully transformed plants.

The research team noted that while a high proportion of T-DNA insertions were observed, most did not yield the desired edits in genes. This pointed to the need for further optimization of the gene editing vectors used and the conditions under which the Transformations take place.

To address these issues, the researchers plan to modify the genetic vectors used in future experiments. They aim to replace the current promoters driving the editing genes with stronger, more efficient ones that have shown promise in other plant species. By making these adjustments, they expect to see higher editing efficiency and a greater number of stable, homozygous plantlets.

Conclusion

This study marks a significant step forward in improving rubber tree breeding through genetic engineering. By optimizing transformation techniques and demonstrating the successful generation of edited seedlings, researchers have paved the way for the future use of CRISPR technology in rubber tree genetic improvement. As the team continues to refine their methods, the potential to accelerate rubber tree cultivation and improve rubber production becomes more achievable. If successful, these advancements could meet the growing global demand for natural rubber while also enhancing the overall quality and traits of the rubber trees used in production.

Original Source

Title: An optimized somatic embryo transformation system assisted homozygous edited rubber tree generation method mediated by CRISPR/Cas9

Abstract: Previously, we have realized the CRISPR/Cas9-RNP and plasmid mediated protoplast transient transformation genome editing in the rubber tree (Hevea brasiliensis), but no gene editing plants were acquired due to the bottleneck of genetic transformation. In present study, antibiotic sensitivity tests against kanamycin, hygromycin and basta were analyzed for embryo screening, the results demonstrated that 10 mg/L hygromycin is the best for transformation. Then Agrobacterium mediated transformation of H. brasiliensis embryos was carried out using a pCAMBIA1300-based CRISPR/Cas9 vector targeting Phytoene desaturase gene (HbPDS). High-throughput sequencing of T0 generation positive embryos which were used as regeneration materials in typical transformation procedure showed that more than 90% T0 edited embryos are chimeric with a 3.2% editing efficiency. A T0 embryo with 9.8% edited cells was sliced into small pieces for one more cycle embryogenesis to produce T1 generation embryos in order to improve the ratio of homozygous embryos. Subsequently, next-generation sequencing (NGS) demonstrated that 29 out of 33 T1 embryos were edited, nearly 50% of which were found homozygous. At last, besides four chimeric plantlets with partial albino leaves, four plantlets with complete albino phenotype were regenerated from the 29 T1 generation edited embryos, among which one is a homozygous mono-allelic mutant and the other three are homozygous bi-allelic mutants. NGS demonstrated that the threshold for the proportion of edited cells with expected albino phenotype is between 70-85%. Additionally, Tail-PCR indicate that the T-DNA was inserted into different genome positions in the four homozygous edited plantlets, combined with the different genotypes are considered, the four homozygous plantlets can be confirmed as independently derived from single transformed cells. Overall, this is the first edited rubber trees with expected phenotype reported publicly, which shows the potential in genetic improvement of H. brasiliensis by CRISPR/Cas9 gene editing, and subculture of T0 positive transformed somatic embryos into T1 generation is proved to be an effective and necessary procedure to produce homozygous transgenic plantlets. This study presents a significant advancement in transgenic and gene editing for rubber tree.

Authors: Tiandai Huang, X. Yang, Q. Lin, J. Udayabhanu, Y. Hua, X. Dai, S. Xin, X. Wang

Last Update: 2024-03-29 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.03.14.585007

Source PDF: https://www.biorxiv.org/content/10.1101/2024.03.14.585007.full.pdf

Licence: https://creativecommons.org/licenses/by-nc/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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