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Antibiotics and Their Long-Term Effects on Gut Health

Study reveals how antibiotics impact gut bacteria diversity over time.

Tove Fall, G. Baldanzi, A. Larsson, S. Sayols-Baixeras, K. F. Dekkers, U. Hammar, D. Nguyen, T. Graells, S. Ahmad, C. Gazolla Volpiano, G. Meric, J. D. Järnhult, T. Tängden, J. F. Ludvigsson, L. Lind, J. Sundström, K. Michaëlsson, J. Ärnlöv, B. Kennedy, M. Orho-Melander

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Using Antibiotics often can increase the risk of being overweight, developing type 2 diabetes, and having heart problems. This might be because antibiotics can change the bacteria in our gut. Studies show that the mix of bacteria in our gut relates to our Health, including our weight and other serious health issues.

Some smaller studies found that people’s gut bacteria changed a lot just a few days after taking antibiotics. These changes include fewer types of bacteria and fewer genes from bacteria. Other changes might include an increase in harmful bacteria and a higher chance of getting certain infections. Many of these changes usually go back to normal within a few months, but some changes can last longer.

Despite how often antibiotics are used, large studies looking at their long-term effects on gut bacteria are still lacking. This study aimed to see how antibiotic use over the past eight years affected the bacteria in the gut by looking at data from a Swedish health registry alongside gut bacteria samples.

Study Population

The study looked at participants from three Swedish population-based studies. Fecal samples, which are stool samples, were collected from over 17,000 people. These samples were saved and analyzed for their bacteria content. Participants also provided information about their other health conditions through surveys and medical records.

Antibiotic Use

All antibiotics given to outpatients in Sweden must have a prescription and are recorded in a national registry. Researchers collected data on various antibiotics prescribed in the last eight years, classifying them into different groups based on their types. They focused on antibiotics like penicillins, cephalosporins, macrolides, and others. The study considered different time frames for antibiotic use, such as those taken less than one year, between one to four years, and four to eight years before the participants provided their stool samples.

Exclusion Criteria

The study had criteria for excluding certain participants. If someone had a visit before specific dates, took antibiotics just before their sample, or had certain ongoing health conditions that could affect the gut bacteria, they were excluded from the study.

Fecal Analysis

Stool samples were sent to a laboratory for testing, where scientists extracted DNA and examined the genetic material to identify the bacteria present in each sample. They looked at over a thousand types of bacteria and assessed their Diversity, which means how many different types of bacteria were present and how evenly they were represented.

Statistical Analysis

The researchers used various statistical methods to analyze the data. They considered factors like age, sex, education, and health conditions to ensure their results were accurate. They checked how the number of antibiotics taken by participants related to the variety of gut bacteria.

Study Results

After removing participants who did not meet the criteria, the study included around 15,000 people. The most commonly prescribed antibiotics were penicillin and tetracyclines. About 70% to 74% of participants had taken antibiotics at least once in the past eight years.

Impact of Antibiotic Use on Gut Bacteria

The study found that taking antibiotics was linked to a decrease in the diversity of gut bacteria. This means that as people took more courses of antibiotics, the types of bacteria in their guts became less varied. The effect was stronger for antibiotics taken in the year before giving a stool sample but still significant for those taken years earlier.

Some antibiotics, particularly clindamycin, fluoroquinolones, and flucloxacillin, were linked to larger reductions in the variety of gut bacteria. Even just one course of these antibiotics can impact gut bacteria for years.

Changes in Specific Bacteria

The results indicated that certain antibiotics were tied to significant changes in specific gut bacteria. Clindamycin was linked to changes in many types of bacteria. Although some associations showed increases in certain bacteria, most resulted in decreases. For instance, clindamycin taken less than a year before sampling was connected to a significant drop in over 300 types of bacteria.

Flucloxacillin showed similar trends, affecting many species of bacteria, especially those that are primarily Gram-positive. Fluoroquinolones, known to affect a broader range of bacteria, also had a notable impact.

Implications for Health

The findings suggest that using antibiotics can have lasting effects on gut bacteria, which can, in turn, influence health outcomes. Past studies have connected changes in gut bacteria diversity to issues like obesity, diabetes, and Inflammation.

The alterations in gut bacteria could promote inflammation and affect how nutrients are absorbed, possibly contributing to the development of various health problems.

Recovery of Gut Bacteria

How gut bacteria recover after antibiotic treatment can vary. Some studies show that bacterial variety can return within weeks, but for certain antibiotics, it could take months or longer. While some antibiotics, like amoxicillin, might have shorter recovery times, others like clindamycin and fluoroquinolones showed more extended effects.

Limitations of the Study

This study relied on records of antibiotics dispensed in Sweden, meaning antibiotics given during hospital stays were not included. This could lead to an underestimation of actual antibiotic use. Also, the registry does not indicate why antibiotics were prescribed, which might complicate the analysis of their effects.

Another downside is that although the study had a large sample size, the specific details about when the stool samples were taken were not always precisely recorded, which could impact the timing of the antibiotic assessments.

Conclusion

The research indicates that different classes of antibiotics can significantly influence gut bacteria for several years. Clindamycin, fluoroquinolones, and flucloxacillin were found to have the most substantial effects on gut bacteria diversity. These insights could guide future antibiotic prescriptions, emphasizing the need for careful consideration of antibiotic use to minimize negative impacts on gut health.

By understanding how antibiotics affect gut bacteria, healthcare providers can make better decisions and help patients maintain a healthier balance of gut microbes, which is crucial for overall health.

Original Source

Title: Antibiotic use in the past 8 years and gut microbiota composition

Abstract: BACKGROUNDDisruptions in gut microbiota have been implicated in cardiometabolic disorders and other health outcomes. Antibiotics are known gut microbiota disruptors, but their long-term consequences on taxonomic composition of the gut microbiome remain underexplored. MO_SCPLOWETHODSC_SCPLOWWe investigated associations between register-based oral antibiotic use over 8 years and gut microbiota composition assessed with fecal shotgun metagenomics in 15,131 adults from the Swedish population-based studies SCAPIS, MOS, and SIMPLER. We applied multivariable regression models with the number of prescriptions in three pre-specified periods before fecal sampling (

Authors: Tove Fall, G. Baldanzi, A. Larsson, S. Sayols-Baixeras, K. F. Dekkers, U. Hammar, D. Nguyen, T. Graells, S. Ahmad, C. Gazolla Volpiano, G. Meric, J. D. Järnhult, T. Tängden, J. F. Ludvigsson, L. Lind, J. Sundström, K. Michaëlsson, J. Ärnlöv, B. Kennedy, M. Orho-Melander

Last Update: 2024-10-15 00:00:00

Language: English

Source URL: https://www.medrxiv.org/content/10.1101/2024.10.14.24315441

Source PDF: https://www.medrxiv.org/content/10.1101/2024.10.14.24315441.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to medrxiv for use of its open access interoperability.

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