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Uncovering the Mystery of BeeR Proteins

A new bacterial protein family reveals unique structures and functions.

Julien R.C. Bergeron, Shamar L. M. Lale-Farjat, Hanna M. Lewicka, Chloe Parry, Justin M. Kollman

― 6 min read


BeeR Proteins: A Unique BeeR Proteins: A Unique Discovery push scientific boundaries. New insights into protein structures
Table of Contents

Actin is a tiny but mighty protein that plays an essential part in the structure and function of cells. Think of actin as one of the building blocks of life. These proteins come together to form long chains or Filaments, helping cells maintain their shape, move around, and even divide. When actin attaches to a molecule called ATP, it can link up with other actin proteins to create these filaments. However, when ATP is used up, the filaments fall apart. It's a bit like a LEGO set that you can build and take apart over and over!

In addition to actin, there are similar proteins found in bacteria. These bacterial proteins help maintain the shape and structure of the bacteria, much like actin does in larger cells. Each type of bacterial protein has its own job to do. For instance, some proteins keep rod-shaped bacteria looking nice and neat, while others help divide the bacterial cell during reproduction. They may not wear capes, but these proteins certainly have their superpowers!

Discovering New Bacterial Actin-Like Proteins

Researchers were curious about other types of actin-like proteins. They decided to search through a large database that contains information about bacteria, looking for new proteins that might have interesting shapes and functions. After some searching, they found a group of proteins related to a known bacterial actin protein called MamK. This new set of proteins was found mostly in a group of bacteria called Verrucomicrobiota, which live in places like soil and even in our guts.

What makes these proteins special? They have some common features with actin, like certain parts that bind to ATP. However, they also have a unique twist: they have extra sections that are not well-defined and seem to be “floating around.” This unstructured part makes them quite different from the usual actin-like proteins.

The Structure of BeeR Filaments

When researchers took a closer look at these newly discovered proteins, they noticed something surprising: they form a really cool, three-stranded filament structure that looks like twisted rail tracks! This is quite different from the two-stranded structures found in many other actin-like proteins. This new filament formation suggests that BeeR, as they named this family of proteins, has its own set of rules for building structures.

To confirm the findings, researchers put the BeeR protein through a series of tests. They found that it could easily connect with ATP to form these fascinating filaments. However, they noticed something interesting; at high concentrations of the protein, the BeeR filaments could still form even when attached to another molecule called ADP, which is a less active form of ATP. It’s like having two different types of LEGO bricks that can still build something amazing!

Cryo-Electron Microscopy: A Closer Look

To truly understand the BeeR protein and its filament structure, scientists used a neat technique called cryo-electron microscopy. This means they cooled down the proteins and looked at them under a very powerful microscope to see how they are arranged. Imagine trying to find out what a snowflake looks like by using a super-duper magnifying glass!

When they did this, they discovered that the structure of the BeeR filament is not just any shape; it’s a hollow tube! This unique feature helps BeeR stand out among other actin-like proteins. The diameter of this tube is quite large, making it different from other proteins. In fact, it has an internal space that's like a little tunnel inside! Think of it as a fancy water slide—perfectly designed but not quite right for carrying passengers!

BeeR and Its Disordered N-terminal Domain

One interesting aspect of the BeeR protein is its extra section at the end, known as the N-terminal domain. This part doesn’t have a well-defined shape, which is unusual. Researchers were curious whether this “wiggly” section would affect how the protein forms its filaments. To test this, they made a version of BeeR without the N-terminal domain.

Surprisingly, the modified version could still form filaments, but they tended to clump together in larger bundles. This means that the N-terminal domain acts like a soft coat that keeps the filaments from sticking together too much. Think of it like a party where everyone is dancing. If there’s enough space (thanks to the N-terminal), the dancers can groove without bumping into each other!

Properties and Functions of BeeR

The exact function of the BeeR protein family is still something of a mystery. Researchers are not sure what role it plays in the life of the Verrucomicrobiota bacteria, but the fact that it's found throughout this group suggests it's important.

The three-stranded tubular structure makes BeeR sturdier than many other actin-like proteins, which could change how it functions in a cell. While it might not be used for transporting materials, it could provide support during other important cellular tasks.

Comparisons with Other Actin-Like Proteins

When researchers compared BeeR to other bacterial actin-like proteins such as MamK, they found something intriguing: the way they are built is different! While many actin-like proteins tend to form two-stranded structures, BeeR’s three-stranded arrangement is unique. A few details in their structure also show that BeeR is designed for different roles compared to its relatives.

The parts of BeeR that connect with neighboring subunits in the filament are also quite different. In BeeR, each section interacts closely with two neighboring structures, leading to a stronger hold. In contrast, other actin-like proteins have different patterns of connections, allowing them to behave differently.

The Bigger Picture: Understanding Actin Diversity

The study of BeeR and its unique filament structure opens up new ideas about the diversity of actin-like proteins. With so many variations, researchers can better appreciate how life has evolved over time and how different proteins can develop specific shapes and functions.

Understanding these differences isn't just academic; it can lead to new insights into how cells work, how they move, and how they change shape. This knowledge could even be useful in medical applications or biotechnology, where we harness the power of nature.

Conclusion: Proteins in Action!

In summary, BeeR is a fascinating new player in the world of bacterial proteins. With its three-stranded structure and unique properties, it stands apart from other actin-like proteins. Although we might not know everything about its function just yet, the discoveries of this protein shed light on the complexity and diversity of life at the molecular level.

As research continues, who knows what other secrets these tiny proteins will reveal? They might just hold the keys to some of life’s biggest mysteries—or at least a few jokes about how proteins like to party!

Original Source

Title: A family of bacterial actin homologues forms a 3-stranded tubular structure

Abstract: The cytoskeleton plays a critical role in the organization and movement of cells. In Eukaryotes, actin filaments polymerize into a highly conserved double-stranded linear filamentous structure in the presence of ATP, and disassemble upon ATP hydrolysis. Bacteria also possess actin-like proteins, that drive fundamental cellular function, including cell division, shape maintenance, and DNA segregation. Like eukaryotic actin, bacterial actins assemble upon ATP binding. Longitudinal interactions between bacterial actin protomers along each strand are conserved with eukaryotic actin, but variation in interactions between strands gives rise to striking diversity of filament architectures. Here, we report a family of bacterial actins of unknown function, conserved amongst the Verrucomicrobiota phylum, which assembles into a unique tubular structure in the presence of ATP. A cryo-EM structure of the filaments reveals that it consists of three strands, unlike other described bacterial actin structures. This architecture provides new insights into the organization of actin-like filaments, and has implications for understanding the diversity and evolution of the bacterial cytoskeleton.

Authors: Julien R.C. Bergeron, Shamar L. M. Lale-Farjat, Hanna M. Lewicka, Chloe Parry, Justin M. Kollman

Last Update: 2024-12-11 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2023.11.07.565980

Source PDF: https://www.biorxiv.org/content/10.1101/2023.11.07.565980.full.pdf

Licence: https://creativecommons.org/licenses/by-nc/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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