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The Sticky World of Microbial Adhesion

Explore how microbes stick and the antibodies that fight them.

Kelli L. Hvorecny, Gianluca Interlandi, Tim S. Veth, Pavel Aprikian, Anna Manchenko, Veronika L. Tchesnokova, Miles S. Dickinson, Joel D. Quispe, Nicholas M. Riley, Rachel E. Klevit, Pearl Magala, Evgeni V. Sokurenko, Justin M. Kollman

― 7 min read


Microbes and Antibodies: Microbes and Antibodies: The Battle antibody strategies. A deep dive into microbial adhesion and
Table of Contents

Microbes, such as bacteria and viruses, are like tiny hitchhikers that find a way to stick to different surfaces. This sticking action is often the first step in Infections and the building of Biofilms, which are communities of microorganisms that can form on both living tissues and non-living surfaces. Imagine these microbes as party crashers who just can’t resist joining the fun wherever they can. By sticking to the surfaces, they can also develop mutual relationships, especially in the gut, where they can aid digestion.

One of the fascinating aspects of how microbes attach to surfaces is their use of special proteins called Adhesins. These proteins help them recognize and bind to specific structures found on surfaces, which often include sugars known as oligosaccharides. Fimbrial adhesins, in particular, are like the sticky fingers of bacteria, helping them grab hold of their hosts.

FimH: The Superstar of Fimbrial Adhesins

Among the various types of adhesins, FimH from Escherichia coli stands out as the most famous. Think of FimH as the lead singer in a rock band of proteins. It’s the best understood member of a large family of structurally diverse fimbrial adhesins, especially in bacteria that have a specific assembly method called the chaperone-usher pathway.

FimH plays a vital role in illnesses like urinary tract infections and inflammatory bowel disease, making it a prime target for researchers looking to combat infections. Located at the very tip of type 1 fimbriae (or pilus), FimH consists of two main parts: a lectin domain that binds to specific sugars (like a key fitting a lock) and a pilin domain that connects to other parts of the fimbria.

The Mechanics of Ligand Binding

When FimH encounters the right sugar, something interesting happens. The protein changes shape dramatically, much like how a rubber band snaps into a new position when stretched. When there's no sugar, FimH stays in a folded, inactive state, with its binding area open and relaxed. However, once a sugar binds, FimH shifts into a more active shape, ready to attach firmly.

This change can be influenced by mechanical force. Imagine pulling on a string: it can create tension that causes parts to move apart or come together. In FimH's case, this force pretty much helps it change from a curled-up ball into an elongated, active form that binds better.

FimH and Its Antibodies: A Battle of Wits

Researchers have found that because adhesins like FimH are so crucial for infections, they make excellent targets for new treatments. By blocking FimH’s ability to stick, we might prevent infections from happening in the first place.

Scientists have been devising clever strategies to inhibit FimH. For instance, they’ve developed compounds that mimic the sugars that FimH binds to, effectively tricking the protein and stopping it from making connections. Just like a clever magician pulling a rabbit out of a hat, these strategies aim to fool FimH into losing its grip.

Types of Antibodies and Their Roles

In their quest for knowledge, researchers have identified various antibodies that specifically target FimH. They categorized these antibodies into groups based on how they work:

  1. Orthosteric Antibodies: These are direct competitors that block the sugar-binding site by fitting into it, much like a cork in a bottle. An example is mAb475, which mimics the sugars and effectively puts a ‘do not enter’ sign on the binding site.

  2. Parasteric Antibodies: These antibodies pop in beside the binding site rather than blocking it directly. For instance, mAb926 attaches to the open pocket of FimH, preventing it from closing to grab sugars. Think of it as a traffic light that stays green, keeping FimH from moving forward.

  3. Dynasteric Antibodies: These antibodies act as speed bumps for FimH, keeping it from transitioning between active and inactive forms. They can hold FimH in its current conformation, whether that's active or inactive.

  4. Activating Antibodies: Unlike the previous types, these antibodies, such as mAb21, encourage FimH to stay in an active form, allowing it to maintain its binding capabilities.

The Power of Structural Analysis

Researchers used advanced techniques like cryo-electron microscopy (cryoEM) to visualize how these antibodies interact with FimH. By creating high-resolution images, they could see exactly where each antibody binds and how this affects FimH’s shape. These studies offered pivotal insights into the different strategies antibodies employ to disrupt FimH's function.

A Closer Look at mAb475: The Orthosteric Inhibitor

One particularly interesting antibody, mAb475, caught the researchers’ attention. It turns out that this antibody has a glycan (a type of sugar) on its hypervariable loop, which allows it to mimic the natural sugars that FimH usually binds to. This unique feature enables mAb475 to block FimH effectively, preventing it from attaching to the host.

When scientists explored the way mAb475 worked, they discovered that removing the glycan hindered its binding capability, affirming that the sugar was crucial for its inhibitory action.

mAb926: The Parasteric Puzzle

Another antibody, mAb926, takes a different approach. Instead of competing directly for the sugar pocket, it binds the open version of FimH. This binding doesn’t prevent FimH from engaging with sugars but alters how well it can do so. Through some smart structural mapping and energetic modeling, researchers revealed how mAb926 prevents FimH from functioning optimally, much like putting a ‘Wet Floor’ sign in a slippery hallway.

mAb21: The Active Enforcer

On the other side of the spectrum, mAb21 works differently. This antibody can only bind FimH when it is in its active conformation. By fitting in snugly, it keeps the protein from shifting back to an inactive state. It’s like a gym trainer keeping someone motivated to stay on the treadmill.

mAb824: The Conformational Trap

mAb824 is another fascinating player. This antibody doesn’t just compete or alter FimH’s binding capabilities; instead, it traps FimH in whichever state it encounters first. It allows FimH to either hold onto sugars tightly or remain inactive, making FimH a less effective adhesive.

Antibody Structure and Interaction Dynamics

The analyses of how these antibodies bind to FimH yielded important insights into the mechanics of their interactions. Researchers were able to see how the antibodies change the shape and structure of FimH when binding occurs. This understanding reveals potential future strategies for targeted therapies against infections caused by FimH-expressing bacteria.

Implications for Future Therapies

The diversity in how different antibodies interact with FimH opens up exciting possibilities for developing new antimicrobial treatments. By targeting FimH with various strategies, scientists may be able to reduce the ability of certain pathogens to cause infections.

Given that many pathogens rely on similar mechanisms to adhere to their hosts, designing treatments based on these findings could have a broad impact on managing infections.

Conclusion

The interplay between microbial adhesins like FimH and the antibodies targeting them showcases a fascinating realm of molecular dynamics. By studying these interactions, scientists can develop innovative strategies to combat infections and improve healthcare outcomes. Just like in a game of chess, each move – whether an antibody binding or a sugar attachment – can make all the difference.

Whether we’re talking about sticky microbes or clever antibodies, the science behind infection and immunity remains an exciting field ripe for discovery and innovation. With a bit of humor and a lot of curiosity, we might just outsmart the tiniest of opponents in the battle for our health.

Original Source

Title: Antibodies disrupt bacterial adhesion by ligand mimicry and allosteric interference

Abstract: A critical step in infections is the attachment of many microorganisms to host cells using lectins that bind surface glycans, making lectins promising antimicrobial targets. Upon binding mannosylated glycans, FimH, the most studied lectin adhesin of type 1 fimbriae in E. coli, undergoes an allosteric transition from an inactive to an active conformation that can act as a catch-bond. Monoclonal antibodies that alter FimH glycan binding in various ways are available, but the mechanisms of these antibodies remain unclear. Here, we use cryoEM, mass spectrometry, binding assays, and molecular dynamics simulations to determine the structure-function relationships underlying antibody-FimH binding. Our study reveals four distinct antibody mechanisms of action: ligand mimicry by an N-linked, high-mannose glycan; stabilization of the ligand pocket in the inactive state; conformational trapping of the active and inactive states; and locking of the ligand pocket through long-range allosteric effects. These structures reveal multiple mechanisms of antibody responses to an allosteric protein and provide blueprints for new antimicrobial that target adhesins.

Authors: Kelli L. Hvorecny, Gianluca Interlandi, Tim S. Veth, Pavel Aprikian, Anna Manchenko, Veronika L. Tchesnokova, Miles S. Dickinson, Joel D. Quispe, Nicholas M. Riley, Rachel E. Klevit, Pearl Magala, Evgeni V. Sokurenko, Justin M. Kollman

Last Update: 2024-12-14 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.12.06.627246

Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.06.627246.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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