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The Impact of Gene Expression on Health

Explore how gene expression affects health, nutrition, and disease.

Benjamin S. Pickard

― 5 min read


Gene Expression: Key to Gene Expression: Key to Health health and disease. Discover how gene expression influences
Table of Contents

Gene Expression is a fundamental process that determines how genes in our DNA translate into proteins that carry out various functions in our bodies. This story explores how gene expression is regulated, why it matters, and how changes in this regulation can influence health.

The Basics of Gene Expression

At the core of gene expression are segments of DNA called genes. Each gene contains the instructions to build proteins, which are vital for the structure, function, and regulation of the body's tissues and organs. The process of gene expression involves two main steps: Transcription and Translation.

  1. Transcription: This is the first step where a particular segment of DNA is copied into messenger RNA (mRNA). Think of mRNA as an instruction manual that carries the genetic information from the DNA in the nucleus of the cell to ribosomes, which are the cell's protein factories.

  2. Translation: This is where the mRNA is read by ribosomes to assemble amino acids in a specific order to form a protein. The ribosomes translate the genetic code from mRNA into a sequence of amino acids, which then fold into functional proteins.

How Gene Expression is Regulated

Gene expression is not a simple, one-size-fits-all process. It's highly regulated and influenced by numerous factors. Promoters are regions of DNA that play a crucial role in starting the transcription process. They can turn genes on or off, affecting how much of a specific protein is made.

Additionally, the availability of certain building blocks, like amino acids and Nucleobases (the building blocks of RNA and DNA), can influence gene expression. For instance, if the body does not get enough amino acids from the diet, it may limit the production of certain proteins, even if the mRNA is present.

The Role of Nucleobases

Nucleobases are like the letters in the genetic book. There are four types: adenine (A), guanine (G), cytosine (C), and uracil (U). These are the building blocks of RNA. The balance and amounts of these nucleobases can affect gene expression levels.

When the supply of nucleobases is low, it can lead to a decrease in the expression of certain genes. This is akin to trying to write a book without enough letters – you just won't be able to complete the sentences properly.

The Connection Between Nutrition and Gene Expression

Diet plays a crucial role in gene expression. For instance, certain proteins require specific amino acids to be produced. If your diet lacks these amino acids, it can affect the overall protein output in your body.

This idea can be expanded to include the availability of nucleobases. If the body has a limited supply due to dietary restrictions or other factors, it may also limit gene expression. Some studies show that certain diseases can cause changes in the availability of nucleobases, which in turn influences how genes are expressed.

Impact of Drugs and Diseases on Gene Expression

It's not just diet that can alter gene expression. Various drugs and diseases can have a significant impact on how genes are turned on or off. When certain drugs are used, they can cause global changes in gene expression profiles across the entire genome, meaning that many genes can be affected simultaneously.

For example, researchers have observed that some drugs can drastically change how certain genes are expressed, shifting the balance of gene expression in one direction or another. This shift can be significant enough to alter the function of cells, potentially leading to side effects or influencing the progression of diseases.

Patterns of Gene Expression

Researchers have observed various patterns in gene expression across different tissues and under different conditions. For instance, the spleen may show a very different gene expression profile compared to the kidney or liver. These differences can be attributed to the unique functions of each organ and its specific needs for proteins.

Additionally, conditions like viral infections or chronic diseases can cause disruptions in normal gene expression patterns. These disruptions can create a "feedback loop," where changes in gene expression can lead to further complications in health.

The Role of Circadian Rhythms

Interestingly, gene expression is also influenced by the time of day. Our bodies operate on a circadian rhythm, which is a natural cycle that regulates various biological processes. Changes in gene expression can occur based on the time of day, affecting everything from hormone levels to metabolism.

For example, at certain times of the day, our bodies may express genes that help us process food more efficiently, while at other times, different sets of genes may be activated, preparing our bodies for rest.

Genetic Susceptibility and Disease

The regulation of gene expression also plays a role in genetic susceptibility to diseases. Certain genetic variations can predispose individuals to conditions like Alzheimer’s, autism, or schizophrenia. The way these genes are expressed can either mitigate or exacerbate the risk associated with these genetic variations.

For example, in some neurodevelopmental disorders, specific genes may be expressed more strongly or weakly, contributing to the symptoms associated with the disorder. This relationship between gene expression and disease highlights the need for a better understanding of how environmental factors, including diet and medication, can influence genetic risk.

Conclusion: The Balancing Act of Gene Expression

Gene expression is a complex, finely-tuned process that is influenced by a multitude of factors, including diet, drugs, diseases, and even the time of day. The relationship between nucleobase availability and gene expression is crucial to understanding how our bodies function and respond to external challenges.

As research continues, we may uncover new ways to manipulate gene expression for therapeutic benefits, offering hope for conditions that currently have limited treatment options. Who knew that the letters of our genetic book could hold the key to so much? So, next time you enjoy a meal, remember that your food is not just fueling your body; it's also writing a story in your genes!

Original Source

Title: Gene expression is globally regulated by interacting nucleobase supply and mRNA composition demand: a mechanism disrupted by multiple disease states and drug treatments

Abstract: Conventional expression studies quantify messenger RNA (mRNA) transcript levels gene-by-gene. We recently showed that protein expression is modulated at a global scale by amino acid availability, suggesting that mRNA expression levels might be similarly affected by nucleobase supply. Re-analysis of transcriptomic datasets confirmed that nucleobase supply and mRNA A+U:C+G sequence composition interact to shape a global profile of expression which can be represented by simple numerical outputs. In mammals, each separate organ and cell-type displays a distinct baseline profile of expression, influenced by differentiation state. Expression profiles shift dynamically across the circadian day and the menstrual cycle. They are also significantly distorted by viral infection, multiple complex genetic disorders (including Alzheimers disease, schizophrenia, and autoimmune disorders), and after treatment with 115 of the 597 chemical entities analysed. These entities included known toxins, but also many commonly prescribed medications such as antibiotics and proton pump inhibitors, thus revealing a new mechanism of drug action and side-effect. A role for nucleobase supply is supported by the actions of nucleobase analogue treatments and by a model of the nucleobase metabolism disorder, Lesch-Nyhan syndrome. On the demand-side, mRNAs at compositional extremes are over-represented in key gene ontologies including transcription and cell division, making these processes particularly sensitive to swings in global expression. This permits efficient en bloc reprogramming of cell state through simple changes in nucleobase proportion and supply. It is also proposed that this mechanism helped mitigate the loss of essential amino acid synthesis in higher organisms. In summary, global expression regulation is invisible to conventional transcriptomic analysis, but its measurement allows a useful distinction between active, promoter-mediated gene expression changes and passive, cell state-dependent transcriptional competence. Linking metabolism directly to expression offers an entirely new perspective on evolution, disease aetiopathology (including GxE interactions), and the nature of the pharmacological response.

Authors: Benjamin S. Pickard

Last Update: 2024-12-23 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.12.23.630131

Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.23.630131.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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