Latest Articles for Bioinformatics

Bioinformatics K2R: A New Approach to DNA Sequence Indexing

K2R improves efficiency in indexing complex DNA sequence datasets.

Lea Vandamme, B. Cazaux, A. Limasset

2025-04-21T08:50:24+00:00 ― 8 min read

Quantitative Methods Revolutionizing Protein Function Prediction with ProtBoost

Discover how ProtBoost is transforming protein function predictions in bioinformatics.

Alexander Chervov, Anton Vakhrushev, Sergei Fironov

2025-04-12T13:08:56+00:00 ― 7 min read

Bioinformatics New Strategies for Efficient K-mer Indexing

A fresh approach to managing genomic data using super-k-mers for better efficiency.

Caleb Smith, Igor Martayan, Antoine Limasset

2025-04-07T21:49:21+00:00 ― 8 min read

Evolutionary Biology The Hidden Role of Introns in Evolution

Introns shape the complexity of life and reveal evolutionary connections.

J. S. A. Mattick, S.-B. Malik, C. F. Delwiche

2025-04-06T18:12:51+00:00 ― 8 min read

Machine Learning Evaluating DNA Language Models: The DART-Eval Insight

DART-Eval benchmarks DNA models for better understanding of gene regulation.

Aman Patel, Arpita Singhal, Austin Wang

2025-03-30T08:25:08+00:00 ― 7 min read

Bioinformatics Advancements in RNA Structure Prediction Techniques

Introducing RNA-TorsionBERT for improved RNA angle predictions and quality assessment.

Fariza Tahi, C. Bernard, G. Postic

2025-03-26T03:22:12+00:00 ― 5 min read

Computation and Language Transformers: The Future of Nucleotide Analysis

Transformers are changing how we analyze DNA and RNA sequences.

Nimisha Ghosh, Daniele Santoni, Indrajit Saha

2025-03-23T08:51:00+00:00 ― 6 min read

Distributed, Parallel, and Cluster Computing SYCL: The Future of Performance Portability

SYCL empowers developers with seamless code across diverse hardware environments.

Manuel Costanzo, Enzo Rucci, Carlos García-Sánchez

2025-03-20T01:24:09+00:00 ― 6 min read

Bioinformatics Unlocking Secrets of Gene Co-Expression in Tetrahymena

Discover how gene co-expression reveals new insights in biology.

Michael A. Bertagna, Lydia J. Bright, Fei Ye

2025-03-16T08:41:57+00:00 ― 7 min read

Systems Biology Merging Gene Regulatory Network Models for AML Research

A new approach to combine gene models for improved understanding of AML.

Guangrong Qin, L. X. Li, B. Aguilar

2025-03-15T10:36:45+00:00 ― 8 min read

Data Structures and Algorithms Understanding Bicliques: Connections in Graph Theory

Discover how bicliques help reveal hidden connections in networks and data.

George Manoussakis

2025-03-06T09:10:48+00:00 ― 6 min read

Genetic and Genomic Medicine WebGWAS: A Game Changer for Genetic Research

A new tool simplifies genetic studies while ensuring privacy and speed.

Michael Zietz, Undina Gisladottir, Kathleen LaRow Brown

2025-03-02T19:25:50+00:00 ― 6 min read

Bioinformatics New Methods in Evolutionary Biology: Protein Structures vs. DNA Sequences

Researchers explore protein structures to understand evolutionary relationships more effectively.

Giacomo Mutti, Eduard Ocaña-Pallarès, Toni Gabaldón

2025-03-01T20:50:03+00:00 ― 5 min read

Genomics The Symphony of Gene Regulation

Discover how genes interact through complex regulatory networks.

Pau Badia-i-Mompel, Roger Casals-Franch, Lorna Wessels

2025-02-25T11:55:21+00:00 ― 8 min read

Genetic and Genomic Medicine New Insights into Genetic Interactions with COWAS

COWAS reveals gene interactions affecting health traits like cholesterol, Alzheimer’s, and Parkinson’s.

Wei Pan, M. M. Malakhov

2025-02-24T10:51:05+00:00 ― 7 min read

Bioinformatics Pepa: A New Tool for Genomic Analysis

Pepa enhances data visualization for understanding genetic inheritance patterns.

Andrea Pozzi

2025-02-21T22:20:12+00:00 ― 6 min read

Genomics CNSistent: A New Tool in Cancer Research

CNSistent streamlines SCNA data analysis for better cancer insights.

Adam Streck, Roland F. Schwarz

2025-02-20T04:55:27+00:00 ― 9 min read

Bioinformatics StripePy: A New Tool for Genomic Analysis

StripePy enhances genomic research by effectively detecting stripes in DNA structure.

Andrea Raffo, Roberto Rossini, Jonas Paulsen

2025-02-15T08:58:09+00:00 ― 6 min read

Bioinformatics Transforming Bioinformatics with Pipemake

Pipemake simplifies workflows for researchers, enhancing data analysis in biology.

Andrew E. Webb, Scott W. Wolf, Ian M. Traniello

2025-02-13T21:04:42+00:00 ― 7 min read

Data Structures and Algorithms Counting Bits: The Method Behind the Magic

Learn how positional population count speeds up data processing.

Robert Clausecker, Daniel Lemire, Florian Schintke

2025-02-10T01:45:45+00:00 ― 5 min read

Bioinformatics Isopeptor: A New Tool for Protein Analysis

Isopeptor automates the detection of isopeptide bonds in proteins, enhancing research accuracy.

Francesco Costa, Rob Barringer, Ioannis Riziotis

2025-02-07T13:13:57+00:00 ― 5 min read

Data Structures and Algorithms Minimizers: Bringing Order to Genetic Data Chaos

Learn how minimizers help make sense of vast genetic information.

Florian Ingels, Camille Marchet, Mikaël Salson

2025-02-03T19:34:00+00:00 ― 5 min read

Evolutionary Biology Addressing Mapping Bias in Genetic Studies

New methods aim to improve accuracy in genetic research by minimizing mapping bias.

Torsten Günther, T. Günther, J. G. Schraiber

2025-01-30T09:12:48+00:00 ― 6 min read

Machine Learning Enhancing Multi-View Clustering Techniques

Discover new strategies to improve multi-view clustering results in various fields.

Liang Du, Henghui Jiang, Xiaodong Li

2025-01-26T17:29:24+00:00 ― 5 min read

Bioinformatics Revolutionizing Disease Models: The Rise of singIST

A new method bridges the gap between disease models and human conditions.

Aitor Moruno-Cuenca, Sergio Picart-Armada, Alexandre Perera-Lluna

2025-01-25T13:15:30+00:00 ― 7 min read

Machine Learning Reimagining Time Series Analysis with Letters

A creative way to analyze time series data using alphabetic mapping.

Sarwan Ali, Tamkanat E Ali, Imdad Ullah Khan

2025-01-20T10:37:12+00:00 ― 6 min read

Distributed, Parallel, and Cluster Computing Speeding Up DNA Sequence Alignment with CUDA and MPI

Discover how combining CUDA and MPI improves DNA sequence alignment efficiency.

Linus Zwaka

2025-01-18T23:18:36+00:00 ― 8 min read

Bioinformatics New Tool Revolutionizes Detection of DNA Methylation in Bacteria

Nanomotif enhances detection of DNA methylation patterns in bacteria and environmental samples.

Mads Albertsen, S. Heidelbach, S. M. Dall

2025-01-17T23:02:36+00:00 ― 5 min read