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Managing Soil pH to Reduce Methane Emissions

Research reveals liming can help lower methane output from pasture soils.

― 6 min read


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Table of Contents

Methane gas is a significant substance in the atmosphere that contributes to climate change. It is much more effective than carbon dioxide at trapping heat. This makes understanding where methane comes from and how it behaves very important. Much of the methane released into the environment comes from human activities, like farming, garbage decomposition, and livestock care. Tropical forest Soils usually work to reduce methane levels in the atmosphere, but when these forests are cut down to create pastures, the situation changes, and these areas can start producing more methane instead.

The Impact of Deforestation

When forests are cleared, the soils that used to absorb methane can become sources of methane emissions. This process often involves burning vegetation and logging, which changes the soil's chemistry. Initially, clearing the forest increases the soil's PH level. However, over time, the soil tends to become more acidic again, approaching the pH levels found in forest soils. To counteract this acidity, farmers sometimes add lime to the soil. While this can help with growing crops, it can also affect the way methane is processed in the soil.

How Methane is Produced and Removed

Most atmospheric methane comes from living organisms. A group of single-celled organisms known as methanogenic archaea is mainly responsible for producing methane. On the other hand, methanotrophic Microorganisms can consume methane, which helps reduce its levels in the atmosphere. These bacteria are found in various environments, including soils and oceans.

Bacteria that eat methane can be grouped into two main types. The first group, type I, uses a specific process to convert methane into forms they can use for energy. The second group, type II, uses a different process. Both types can thrive in areas with high amounts of methane.

Changes in Soil Microbial Communities

Converting forests to pastures leads to significant changes in the makeup of the bacteria in the soil. Studies have shown that this type of change reduces the number of methanotrophic bacteria while increasing the number of methane-producing archaea. Recent findings suggest that establishing pastures not only increases the number of methane-producing organisms but also enhances their activity. The change in soil pH from agriculture practices is considered a contributing factor to these shifts.

Understanding Microbial Activity

Measuring how active microbes are in the soil is challenging because of the complex interactions among different microorganisms. A method called Stable Isotope Probing (SIP) helps researchers identify which microbes are active. This technique involves using special substances that label the microorganisms, allowing scientists to track which ones are incorporating those substances into their structure.

Analyzing soil samples poses additional challenges, as soils can vary greatly in composition and microbial activity. For example, pasture soils can release large amounts of methane when saturated with water compared to forest soils. This means that understanding how soil conditions affect methane production is crucial.

Researching Soil pH and Methane Uptake

This study focused on how adjusting the pH of acidic forest and pasture soils in the Amazon rainforest can influence methane consumption. The goal was to see if correcting the pH of the soil would encourage the activity of certain methane-eating microorganisms. By collecting soil samples and conducting laboratory experiments, researchers could evaluate the effects of Liming on methane uptake.

Sampling Sites

The research was conducted in the Amazon region, specifically in a protected forest and nearby pastures. Soil samples were collected during different seasons to account for variations in moisture and microbial activity. The area where pastures had been established showed signs of minimal degradation, while the forest remained well-conserved.

Analyzing Soil Properties

After collecting the samples, scientists analyzed the chemical properties of the soil. This included measuring pH levels and assessing nutrient availability. Understanding these properties was essential for determining how liming and land use changes affected soil functionality.

Conducting Liming Experiments

In the laboratory, researchers set up experiments to test how liming affected methane absorption in soils. They prepared soil samples from both forest and pasture plots and added lime to some of the samples to increase pH. They then monitored methane concentrations to assess the uptake rates of the different soil treatments.

Incubating Soil Samples with Methane

To measure how well soils could uptake methane, experiments were conducted using different methane concentrations. The soils were incubated with a known amount of methane gas, and samples were taken over a period to measure methane levels at different intervals. This helped illustrate how soil type and pH adjustments influenced methane absorption.

Measuring DNA in Soil Microbes

After the incubation, the total DNA from the soil was extracted to analyze which microorganisms were consuming methane. The samples were separated based on density. This allowed researchers to identify which organisms were actively incorporating methane into their DNA, signaling their role in the methane cycle.

Sequencing Microbial DNA

To gain insight into the types of bacteria present, researchers conducted high-throughput sequencing on the extracted DNA samples. This process helped determine the composition of the microbial community in both limed and unlimed soils.

Results and Findings

The results showed that liming significantly increased the soil's ability to absorb methane, particularly in pasture soils. After adjusting the pH, the pasture soils consumed methane at much higher rates than untreated soils. This indicated that liming could be a useful practice for managing methane emissions from agricultural lands.

The Role of Methanotrophic Bacteria

Two main groups of methanotrophic bacteria were identified as active in the limed pasture soils. The first group includes Methylocaldum sp., a type I methanotroph known for thriving in conditions with high methane concentrations. The second group consists of members of the Beijerinckiaceae family, which are type II methanotrophs typically found in various soil types.

Active Microbial Groups and Their Functions

Among the identified active microorganisms, members of the Nitrososphaeraceae family were also noted for their role in the methane cycle. These microorganisms are known for their ability to oxidize ammonia, which is essential in various soil processes. By linking different microbial functions, these relationships show how soil health and microbial ecology intersect in managing methane emissions.

Conclusion

The study highlights the importance of soil management practices, such as liming, in mitigating methane emissions from pasture soils. While these practices have shown promise in stimulating methane consumption by encouraging the growth of active methanotrophic communities, further research is necessary to understand the intricate relationships among soil microbes, land use, and methane dynamics.

By focusing on the effects of pH adjustments in tropical soils, this research contributes valuable knowledge to help manage greenhouse gas emissions more effectively. It opens avenues for future studies aimed at identifying optimal practices for sustainable agriculture while addressing climate change concerns.

Implications for Future Research

The findings suggest that managing soil conditions can play a crucial role in reducing methane emissions in agricultural practices. Future research should focus on the long-term impacts of liming and other soil amendments on microbial communities and methane cycling. Understanding these dynamics could lead to more effective strategies for minimizing the environmental impact of agriculture on climate change while preserving soil health.

Continued investigations will help clarify the conditions under which different methanotrophic bacteria thrive, offering insights into promoting their activity in various soil types.

Original Source

Title: Liming pasture soils in the Amazon region promotes low-affinity methane oxidation by type I and II methanotrophs

Abstract: In the Amazon Forest region, cattle pastures are the main land use subsequent to deforestation. This land-use change affects the soil microbial community and methane fluxes, shifting the soil from a methane sink to a source. Soil physical and chemical attributes are changed due to slash-and-burn processes, including an increased soil pH after forest-to-pasture conversion. Without amendments, the pasture soils can become acidic again resulting in many cases in soil degradation. Liming is a standard management practice to increase soil pH while decreasing Al3+ availability. Liming is important to recover these degraded lands and increase soil fertility, but its impact on soil methane cycling in tropical soils is unknown. Here we investigated the role of soil pH on methane uptake under high concentrations of the gas. The top layer of forest (pH 4.1) and adjacent pasture soils (pH 4.8) from the Eastern Amazon were subjected to liming treatment (final pH 5.8) and incubated with [~]10,000 ppm of 13CH4 for 24 days to label DNA with 13C. Soil DNA was evaluated with Stable Isotopic Probing (SIP-DNA), methanotrophic abundance was quantified (pmoA gene), and high throughput sequencing of 16S rRNA was performed. Liming increased the methane uptake in both forest ([~]10%) and pasture ([~]25%) soils. Methanotrophs Methylocaldum sp. (type I) and Beijerinckaceae (type II) were identified to actively incorporate carbon from methane in limed pasture soils. In limed forest soils, Nitrososphaeraceae, Lysobacter sp., and Acidothermus sp. were identified as 13C-enriched taxa. The enrichment of the archaeal family Nitrososphaeraceae, known as ammonia oxidizers, is correlated with an increase of ammonia monooxygenase genes, which code for an enzyme complex with wide substrate specificity that can also perform methane oxidation. In conclusion, liming Amazonian pasture soils not only contributes to the fertility and recovery of degraded areas but also has the potential to improve the oxidation of methane at high concentrations of this gas.

Authors: Leandro Fonseca de Souza, F. M. Nakamura, M. Kroeger, D. Obregon, M. T. de Moraes, M. G. Vicente, M. Z. Moreira, V. H. Pellizari, S. M. Tsai, K. Nusslein

Last Update: 2024-01-17 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.01.16.575838

Source PDF: https://www.biorxiv.org/content/10.1101/2024.01.16.575838.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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