Advances in Imaging Frozen Brain Tissue
New techniques improve the study of brain diseases through preserved tissue analysis.
― 6 min read
Table of Contents
- Freezing and Storing Brain Tissue
- Targeting Specific Areas in the Brain
- Challenges with Imaging Frozen Tissue
- The Importance of RNA Integrity
- Preparing for MRI Imaging
- Conducting MRI on Cold Tissue
- Observing Anatomical and Pathological Details
- Safety Considerations in Handling Tissue
- Future Directions for MRI in Brain Research
- Conclusion
- Original Source
When a person passes away, understanding what happened in their Brain can be essential for studying Diseases like multiple sclerosis. One way to do this is by preserving brain tissue after death, which helps scientists study it later. The tissue needs to be handled carefully to keep its structure and function intact. This article will discuss how brain tissue is frozen, stored, and studied using advanced Imaging techniques.
Freezing and Storing Brain Tissue
After a person dies, their brain may be flash-frozen to preserve important biological materials like DNA, RNA, and proteins. The freezing process is quick and involves cutting the brain into small pieces, typically about 1-2 cm thick. These pieces are then dipped in a special liquid that cools them very fast, helping to prevent damage during freezing. The temperature for this process is usually between -70 °C and -160 °C. After this initial freezing, the tissue is often stored at -80 °C for long-term preservation.
For scientists to analyze the brain tissue effectively, it needs to be cut into thin sections. However, this is usually done at a warmer temperature, between -7 °C and -10 °C, so the tissue remains viable for study.
Targeting Specific Areas in the Brain
In order to study specific regions of the brain for diseases, scientists must know where these areas are located. They can use imaging techniques to identify these spots before the person passes away, shortly after death, or on the preserved tissue itself. Imaging can help researchers plan their studies effectively, although it may become complicated at times.
Imaging tools can be especially useful in studying neurological disorders and brain injuries. These tools allow scientists to see how Tissues behave in various conditions, which can help inform future studies on the brain.
Challenges with Imaging Frozen Tissue
One of the main challenges with imaging frozen brain tissue is the quick loss of signal from the protons in the tissues. This makes it hard to get clear images using standard imaging techniques. However, research has shown that frozen tissue can still be imaged effectively, but it has to be done at the right temperatures.
To gather clear images, researchers have experimented with temperatures around -16.6 °C. They have shown that special imaging techniques can be used to study frozen tissue, even if standard methods face challenges. It is crucial to find the right temperature that maintains tissue quality while still allowing for effective imaging.
The Importance of RNA Integrity
A specific focus in the preservation of brain tissue is keeping RNA secure. RNA is crucial for understanding how cells operate and can serve as a marker for tissue health. Researchers have tested ways to measure RNA quality from frozen brain tissue and have found that it degrades over time at different temperatures.
By determining how quickly RNA degrades, scientists can select optimal temperatures for maintaining the integrity of both RNA and the tissue itself during imaging. This is particularly important because maintaining RNA quality is vital for accurate results in future studies.
Preparing for MRI Imaging
To prepare brain tissue for MRI imaging, researchers have taken significant steps. Using mouse brain tissue as a model, they have analyzed RNA stability at various temperatures. After determining the best conditions for maintaining RNA quality, they prepared the MRI setup. This involved placing frozen tissue blocks in a special chamber that allowed for efficient cooling during the imaging process.
The chamber was designed to maintain cold temperatures while allowing safe transport and operation within the imaging system. By using a recycling cooler, researchers could ensure a consistent temperature during imaging to prevent any loss of RNA or tissue quality.
Conducting MRI on Cold Tissue
Researchers have successfully carried out MRI scans on cold brain tissue samples. The imaging was done using a specially designed radiofrequency coil that fit snugly around the tissue chamber, allowing for high-resolution images of the brain. This setup allowed scientists to visualize various structures within the brain, including areas affected by disease.
During imaging, the temperature of the tissue was closely monitored. Initial tests indicated that the cooling system was effective, maintaining low temperatures that preserved RNA while providing adequate imaging results.
Observing Anatomical and Pathological Details
Imaging cold brain tissue has provided clear insights into its structure. High-resolution images have revealed important details, including the boundaries between different types of brain matter and blood vessels. Researchers could also identify lesions within the brain, which are critical for understanding diseases.
Each frozen tissue block maintained its shape during imaging, allowing researchers to target specific areas for further analysis without losing information about the original condition of the tissue.
Safety Considerations in Handling Tissue
A major concern when working with human brain tissue is safety. Researchers used a sealed chamber to prevent any airborne particles from spreading when handling the samples. This was important not only for the safety of those involved but also for maintaining the tissue quality throughout the process.
Additionally, a portable freezer was utilized to keep the tissue at a safe temperature while it was being transported to the imaging facility. This ensured that the RNA quality was preserved, allowing for successful imaging upon arrival.
Future Directions for MRI in Brain Research
The advancements in imaging frozen brain tissue open new avenues for research. Researchers can now screen large collections of frozen human tissues before more detailed analyses. This can help guide future studies on brain diseases, as they can identify key areas for closer examination.
The ability to adjust imaging conditions based on temperature and other factors will also aid scientists in understanding how different factors impact the MRI signal. As the field evolves, continued exploration of these techniques will contribute to a deeper understanding of both normal brain anatomy and the changes that occur during disease.
Conclusion
In summary, the process of preserving and imaging frozen brain tissue has made significant strides. With careful handling and innovative techniques, researchers can study various conditions affecting the brain without compromising the quality of the tissue. This work not only enhances our understanding of brain diseases but also paves the way for new approaches in brain research. The ability to maintain RNA integrity while performing high-resolution imaging marks a significant advancement that can benefit future studies in neurobiology and pathology.
Title: Postmortem MRI of Tissue Frozen at Autopsy
Abstract: IntroductionPostmortem MRI provides insight into location of pathology within tissue blocks, enabling efficient targeting of histopathological studies. While postmortem imaging of fixed tissue is gaining popularity, imaging tissue frozen at the time of extraction is significantly more challenging. MethodsTissue integrity was examined using RNA integrity number (RIN), in mouse brains placed between -20 {degrees}C and 20 {degrees}C for up to 24 hours, to determine the highest temperature that could potentially be used for imaging without tissue degeneration. Human tissue frozen at the time of autopsy was sealed in a tissue chamber filled with 2-methylbutane to prevent contamination of the MRI components. The tissue was cooled to a range of temperatures in a 9.4T MRI using a recirculating aqueous ethylene glycol solution. MRI was performed using a magnetization-prepared rapid gradient echo (MPRAGE) sequence with inversion time of 1400 ms to null the signal from 2-methylbutane bath, isotropic resolution between 0.3-0.4 mm, and scan time of about 4 hours was used to study the anatomical details of the tissue block. Results and DiscussionA temperature of -7 {degrees}C was chosen for imaging as it was below the highest temperature that did not show significant RIN deterioration for over 12 hours, at the same time gave robust imaging signal and contrast between brain tissue types. Imaging performed on various human tissue blocks revealed good gray-white matter contrast and revealing subpial, subcortical, and deep white matter lesions typical of multiple sclerosis enabling further spatially targeted studies. ConclusionHere, we describe a new method to image cold tissue, while maintaining tissue integrity and biosafety during scanning. In addition to improving efficiency of downstream processes, imaging tissue at sub-zero temperatures may also improve our understanding of compartment specificity of MRI signal.
Authors: Govind Nair, R. Sun, H. Merkel, K. Hoskin, K. Bree, S. Dodd, A. Koretsky
Last Update: 2024-01-23 00:00:00
Language: English
Source URL: https://www.biorxiv.org/content/10.1101/2024.01.20.576456
Source PDF: https://www.biorxiv.org/content/10.1101/2024.01.20.576456.full.pdf
Licence: https://creativecommons.org/publicdomain/zero/1.0/
Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.
Thank you to biorxiv for use of its open access interoperability.