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Advancements in Federated Learning for Medical Imaging

FedFBN improves model training using diverse medical data while protecting patient privacy.

― 5 min read


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Table of Contents

In recent years, deep learning has shown great promise in analyzing medical images, especially chest X-rays. Large datasets have helped create models that can detect different health issues with high accuracy. However, many of these datasets only contain some of the possible disease Labels and can be divided among different institutions. This division creates challenges, especially when some labels might be missing or incomplete, complicating how we can train effective models.

Federated Learning Overview

Federated Learning (FL) is a method that allows multiple locations to train machine learning models without sharing sensitive data. Instead of sending all the data to a central location, each site trains its model with its data and only shares the updates with a central server. This server combines the findings from each local model to create a final model that reflects knowledge from all locations.

This approach is particularly useful in medical imaging because it allows the use of data from various hospitals while respecting patient privacy. However, since the data can differ greatly in quality and quantity from one site to another, this can lead to challenges in creating a strong global model.

Challenges in Federated Learning

Many medical images and their accompanying labels come from different sources. This means that the data can be very different in nature, which poses challenges for federated learning. When local models trained on various datasets try to share information, the differences can lead to poor results. In particular, an issue arises when Batch Normalization layers are used in the models. These layers help speed up training by adjusting the inputs, but when the data is very different, this adjustment can negatively impact the final model.

Batch Normalization Issues

Batch normalization (BN) layers play a big role in how deep learning models learn. They ensure that the training process is stable and can speed up learning. However, when the data is from different sources (Non-IID), the statistics learned by each local model can be inconsistent. This can make it difficult to combine the models effectively, resulting in lower accuracy.

Introducing FedFBN

To improve this, we introduce a new method called FedFBN. This approach is inspired by previously successful methods and uses pre-trained networks while keeping the batch normalization statistics unchanged during training. By doing this, we hope to reduce the issues caused by differences in data while improving how well the global model performs.

Experiment Setup

We conducted several experiments to test the effectiveness of FedFBN. We looked at:

  1. Data that was distributed but contained all the necessary labels.
  2. Data that was distributed and had some missing labels.
  3. Data that was both non-iid and complete.
  4. Data that was both non-iid and had missing labels.

In all experiments, FedFBN was compared against other common methods, like the traditional FedAvg and a recent method called FedBN.

Key Experiments

Experiment 1: Distributed IID Data with Complete Labels

In our first experiment, we used two synthetic datasets with all disease labels. Here, we found that FedFBN performed just as well as the baseline model, showing it could adapt well to this ideal situation.

Experiment 2: Distributed IID Data with Partial Labels

Next, we tested scenarios where some labels were missing. Even in this more complex situation, FedFBN performed comparably to the baseline model, indicating that it could still work well despite missing information.

Experiment 3: Distributed Non-IID Data with Complete Labels

In the third round, we moved to more complex, non-iid data. Here, FedFBN maintained performance levels similar to baseline models, showing that it could still generate reliable results in less-than-ideal circumstances.

Experiment 4: Distributed Non-IID Data with Partial Labels

Finally, we tackled the most challenging case with non-iid data and missing labels. In this scenario, FedFBN outperformed other methods, showing its ability to adapt and learn effectively despite the challenges of data variety and scarcity.

Results Overview

Across all experiments, FedFBN generally performed better than other methods. In cases with partial labels, it showed a strong understanding of shared disease labels, performing well even when information was missing. It also demonstrated robustness when dealing with data from different distributions.

Conclusion

Dealing with medical imaging data that is distributed and not uniformly labeled is a crucial step for advancing clinical practices. Our findings support FedFBN's ability to create effective Global Models while handling the challenges linked to batch normalization and data diversity. This shows that there are better alternatives to common methods like FedAvg, especially when it comes to the realities of medical data. Although more research is needed in larger, more diverse settings, the initial results suggest that FedFBN has great potential in helping to develop useful medical imaging tools.

In summary, as we work towards improving the use of federated learning in healthcare, FedFBN offers new possibilities for better model training that respects patient privacy while harnessing the collective strength of data from various institutions.

Original Source

Title: Optimizing Federated Learning for Medical Image Classification on Distributed Non-iid Datasets with Partial Labels

Abstract: Numerous large-scale chest x-ray datasets have spearheaded expert-level detection of abnormalities using deep learning. However, these datasets focus on detecting a subset of disease labels that could be present, thus making them distributed and non-iid with partial labels. Recent literature has indicated the impact of batch normalization layers on the convergence of federated learning due to domain shift associated with non-iid data with partial labels. To that end, we propose FedFBN, a federated learning framework that draws inspiration from transfer learning by using pretrained networks as the model backend and freezing the batch normalization layers throughout the training process. We evaluate FedFBN with current FL strategies using synthetic iid toy datasets and large-scale non-iid datasets across scenarios with partial and complete labels. Our results demonstrate that FedFBN outperforms current aggregation strategies for training global models using distributed and non-iid data with partial labels.

Authors: Pranav Kulkarni, Adway Kanhere, Paul H. Yi, Vishwa S. Parekh

Last Update: 2023-03-10 00:00:00

Language: English

Source URL: https://arxiv.org/abs/2303.06180

Source PDF: https://arxiv.org/pdf/2303.06180

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to arxiv for use of its open access interoperability.

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