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Genetic Factors Affecting Ovarian Cancer Survival

Research reveals key genetic links to survival rates in ovarian cancer patients.

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High-Grade Serous Carcinoma (HGSC) is a type of ovarian cancer that is responsible for many deaths related to the disease. Despite some patients responding well to initial treatments, many eventually develop resistance to these treatments. This resistance is often linked to genetic changes in the tumor cells, making the pursuit of effective therapies challenging.

The Challenge of Drug Resistance

Most patients with HGSC who undergo surgery and treatment eventually experience progressive disease due to acquired drug resistance. This is particularly common in advanced stages where surgery can't remove all cancer cells. However, some patients show exceptional responses to treatment and survive much longer than expected. Researchers are interested in learning more about these survivors, as they may provide important insights into why some patients do better than others.

Factors Affecting Treatment Response

Several factors play a role in how well a patient responds to treatment and how long they survive. One of the most significant is whether a complete surgical removal of the tumor is achieved. Patients who have a successful surgery typically fare better than those with leftover cancer.

Molecular studies have identified different subtypes of HGSC based on gene expression. These subtypes are associated with various outcomes. For example, one subtype shows poor survival rates, while another is linked to a stronger immune response and better outcomes.

Patients with certain genetic mutations, such as in the BRCA1 or BRCA2 genes, often have a better response to chemotherapy compared to patients whose tumors have normal versions of these genes. However, having these mutations does not guarantee long-term survival, as many patients still have a common disease course.

The Role of Rb1 in Survival

One area of focus is the RB1 gene, known for its role in regulating the cell cycle. Studies have shown that loss of RB1 expression in HGSC is linked to longer survival. This finding poses interesting questions about why loss of this gene would lead to better outcomes.

In other types of cancers, loss of RB1 often results in poorer outcomes, indicating that the role of RB1 may vary depending on the cancer type. Researchers are looking deeper into how RB1 interacts with other mutations, including those in BRCA1 and BRCA2, and the combined effects of these changes on survival.

Patient Cohorts in Research

In a large study involving thousands of women diagnosed with various forms of ovarian cancer, researchers collected samples and data to explore these questions. A subgroup of patients underwent detailed genetic analysis to understand how RB1 status influenced their survival.

The study found that different subtypes of ovarian cancer could be linked to specific molecular characteristics. By grouping patients based on their genetic profiles, researchers could see trends in survival and treatment response.

Investigating Molecular Changes

The researchers looked at changes in RB1 expression in tumor samples. They found that loss of RB1 was most common in HGSC. This loss was associated with improved survival rates, highlighting a potential connection between RB1 and patient outcomes.

In a contrasting manner, loss of RB1 in endometrioid ovarian cancer correlated with poorer survival. This difference underlines the necessity of understanding the context in which genetic changes occur, as the implications can vary widely.

Effects of Combined Genetic Changes

The presence of both RB1 loss and BRCA mutations was linked to exceptionally good survival rates. Patients with this combination showed a significantly reduced risk of death compared to others. The survival advantage was striking, particularly for those with mutations in BRCA genes combined with RB1 loss.

Researchers are actively investigating how these genetic combinations influence treatment response, particularly to chemotherapy. Initial findings suggest that the interaction between RB1 and BRCA may enhance the effectiveness of standard treatments like cisplatin and olaparib.

Studying Patient-Derived Cell Lines

To further explore these findings, patient-derived cell lines were used in experiments. These cell lines are created from cancer cells taken from patients and provide a way to study the effects of specific genetic alterations in the lab. The response of these cell lines to various drugs was assessed, with attention to their RB1 and BRCA status.

In most cases, cell lines with RB1 loss demonstrated heightened sensitivity to treatment. This responsiveness suggests that RB1 inactivation might be a useful marker for predicting how well a patient might respond to certain cancer therapies.

Investigating Immune Response

The study also examined how RB1 loss affects the immune response within the tumor environment. Tumors with RB1 loss showed a greater presence of CD8+ T cells, which are important components of the immune system that fight cancer. This may indicate that tumors lacking RB1 might be more recognizable to the immune system, leading to better outcomes.

Increased immune activity was observed in patient samples with RB1 loss and BRCA mutations. These findings suggest that targeting immune pathways could be a promising approach for treating patients with these genetic profiles.

Gene Expression and Molecular Subtypes

By analyzing gene expression patterns, researchers could categorize tumors into molecular subtypes. These subtypes are thought to behave differently and respond to treatments in various ways. For example, tumors with RB1 loss often clustered within certain subtypes associated with favorable outcomes.

The presence of RB1 loss correlated with increased expression of genes involved in cell proliferation, which may account for the observed survival benefits in some patients. However, the overall impact of RB1 loss on tumor growth and survival seems to depend on a complex interplay of other factors, including the presence of mutations in DNA repair genes like BRCA.

Implications for Treatment Strategies

Understanding the genetic landscape of HGSC, especially in relation to RB1 and BRCA, could inform treatment approaches. Patients with specific genetic profiles may benefit from targeted therapies that exploit their tumor's weaknesses.

For instance, the enhanced sensitivity to chemotherapy in patients with RB1 loss suggests that these individuals might respond particularly well to certain drug combinations. Developing new treatments that target these vulnerabilities could lead to better outcomes for patients who currently have limited options.

Conclusion

Research into HGSC is revealing important information about how different genetic factors impact treatment response and survival. The role of RB1, especially in combination with BRCA mutations, is proving to be significant in shaping patient outcomes.

By continuing to investigate these connections, researchers hope to uncover new strategies for treating ovarian cancer, ultimately aiming to improve survival rates and quality of life for patients facing this challenging disease. Further studies are needed to validate these findings and to explore how best to apply them in clinical practice.

Understanding the complex interactions between genes like RB1 and BRCA could shift the focus of treatment toward more personalized strategies, where therapies are tailored based on individual genetic profiles.

Original Source

Title: Concurrent RB1 loss and BRCA-deficiency predicts enhanced immunological response and long-term survival in tubo-ovarian high-grade serous carcinoma

Abstract: BackgroundSomatic loss of the tumour suppressor RB1 is a common event in tubo-ovarian high-grade serous carcinoma (HGSC), which frequently co-occurs with alterations in homologous recombination DNA repair genes including BRCA1 and BRCA2 (BRCA). We examined whether tumour expression of RB1 was associated with survival across ovarian cancer histotypes (HGSC, endometrioid (ENOC), clear cell (CCOC), mucinous (MOC), low-grade serous carcinoma (LGSC)), and how co-occurrence of germline BRCA pathogenic variants and RB1 loss influences long-term survival in a large series of HGSC. Patients and methodsRB1 protein expression patterns were classified by immunohistochemistry in epithelial ovarian carcinomas of 7436 patients from 20 studies participating in the Ovarian Tumor Tissue Analysis consortium and assessed for associations with overall survival (OS), accounting for patient age at diagnosis and FIGO stage. We examined RB1 expression and germline BRCA status in a subset of 1134 HGSC, and related genotype to survival, tumour infiltrating CD8+ lymphocyte counts and transcriptomic subtypes. Using CRISPR-Cas9, we deleted RB1 in HGSC cell lines with and without BRCA1 mutations to model co-loss with treatment response. We also performed genomic analyses on 126 primary HGSC to explore the molecular characteristics of concurrent homologous recombination deficiency and RB1 loss. ResultsRB1 protein loss was most frequent in HGSC (16.4%) and was highly correlated with RB1 mRNA expression. RB1 loss was associated with longer OS in HGSC (hazard ratio [HR] 0.74, 95% confidence interval [CI] 0.66-0.83, P = 6.8 x 10-7), but with poorer prognosis in ENOC (HR 2.17, 95% CI 1.17-4.03, P = 0.0140). Germline BRCA mutations and RB1 loss co-occurred in HGSC (P < 0.0001). Patients with both RB1 loss and germline BRCA mutations had a superior OS (HR 0.38, 95% CI 0.25-0.58, P = 5.2 x10-6) compared to patients with either alteration alone, and their median OS was three times longer than non-carriers whose tumours retained RB1 expression (9.3 years vs. 3.1 years). Enhanced sensitivity to cisplatin (P < 0.01) and paclitaxel (P < 0.05) was seen in BRCA1 mutated cell lines with RB1 knockout. Among 126 patients with whole-genome and transcriptome sequence data, combined RB1 loss and genomic evidence of homologous recombination deficiency was correlated with transcriptional markers of enhanced interferon response, cell cycle deregulation, and reduced epithelial-mesenchymal transition in primary HGSC. CD8+ lymphocytes were most prevalent in BRCA-deficient HGSC with co-loss of RB1. ConclusionsCo-occurrence of RB1 loss and BRCA mutation was associated with exceptionally long survival in patients with HGSC, potentially due to better treatment response and immune stimulation.

Authors: Dale W. Garsed, F. A. M. Saner, K. Takahashi, T. Budden, A. Pandey, D. Ariyaratne, T. Zwimpfer, N. S. Meagher, S. Fereday, L. Twomey, K. I. Pishas, T. Hoang, A. Bolithon, N. Traficante, K. Alsop, E. L. Christie, E.-Y. Kang, G. S. Nelson, P. Ghatage, C.-H. Lee, M. J. Riggan, J. Alsop, M. W. Beckmann, J. Boros, A. H. Brand, A. Brooks-Wilson, M. E. Carney, P. Coulson, M. Courtney-Brooks, K. L. Cushing-Haugen, C. Cybulski, M. A. El-Bahrawy, E. Elishaev, R. Erber, S. A. Gayther, A. Gentry-Maharaj, B. Gilks, P. R. Harnett, H. R. Harris, A. Hartmann, A. Hein, J. Hendley, _Aus

Last Update: 2023-11-10 00:00:00

Language: English

Source URL: https://www.medrxiv.org/content/10.1101/2023.11.09.23298321

Source PDF: https://www.medrxiv.org/content/10.1101/2023.11.09.23298321.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to medrxiv for use of its open access interoperability.

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