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New Insights into Antibiotic Resistance in TB Bacteria

Research uncovers mechanisms of antibiotic tolerance in tuberculosis-causing bacteria.

Babak Javid, J. Wu, S. Chaudhuri, S. C. Feid, M. Pan, Q. Kawaji, G. Liu

― 5 min read


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Table of Contents

Antibiotic tolerance is when bacteria can survive even when antibiotics are present. Some bacteria are more susceptible to antibiotics because of their genetic makeup, but they can still resist being killed by these drugs. This is important because it makes treating infections harder.

One group of bacteria known for being tough is Mycobacterium tuberculosis, which causes tuberculosis (TB). A new form of antibiotic tolerance has been discovered in these bacteria, which involves their reaction to the antibiotic Rifampicin. This type of tolerance is called RNA polymerase-specific phenotypic resistance (RSPR). Unlike some bacteria that go into a sleep-like state to avoid antibiotics, bacteria with RSPR can still grow even when exposed to high levels of rifampicin that would typically kill them.

How RSPR Works

Researchers identified that two main processes help Mycobacterium tuberculosis develop RSPR. One of these processes involves a mistake in how the bacteria build proteins. Normally, bacteria have specific equipment to attach building blocks to their protein-making machines. However, Mycobacterium tuberculosis does not have certain proteins needed to do this correctly. Instead, it uses a workaround that sometimes leads to mistakes when adding building blocks, specifically around glutamine and asparagine.

When it mistakes one for another, it can lead to a situation where a critical part of the target for rifampicin is changed. This subtle change allows the bacteria to survive even when the antibiotic is being used.

Finding Ways to Fight Back

Realizing this, researchers believed that if they could find ways to interfere with how Mycobacterium tuberculosis makes these mistakes, they could increase the effectiveness of rifampicin. They discovered a compound called kasugamycin that showed promise in reducing these mistakes and enhancing the effects of rifampicin. However, they wanted to find more compounds that could help.

To achieve this goal, they systematically screened a large collection of synthetic compounds to see if any could decrease the mistakes made by Mycobacterium tuberculosis. They developed a special system to track how well these compounds worked. The goal was to find compounds that could help the antibiotic fight against the bacteria more effectively without causing further issues.

The Search for New Compounds

During the screening process, researchers found several compounds that seemed to work well. Among these were a series of compounds known as benzo[d]isoxazole-4,7-diones. The best among these compounds were found to decrease the misadaptation process and also improve the effectiveness of rifampicin against Mycobacterium tuberculosis.

Researchers continued to refine the compounds, looking for those that could work even better without being harmful on their own. They created analogs of the original compounds and tested them, resulting in a few promising candidates that were more effective than the initial discoveries.

Determining How Compounds Work

With the most promising candidate identified, the next step was to figure out precisely how these compounds worked. The researchers used a technique that allowed them to see what proteins the compounds attached to within the bacteria. The aim was to clarify which parts of the bacteria were affected by the compounds.

Through this process, they found that a specific protein called the 30S ribosomal protein S5 was a key target for their compound. This protein plays a vital role in helping bacteria produce proteins by interfacing with their genetic instructions. By interfering with the function of S5, the compounds could lead to fewer errors in building proteins, thus making the bacteria more susceptible to antibiotics.

Implications for Treatment

These discoveries hold significant promise for improving the treatment of tuberculosis. The standard treatment typically extends for six months, but with the introduction of new compounds that can enhance the effect of rifampicin, treatment times could potentially be reduced.

This line of research is vital not only for tackling TB but also for understanding how bacteria resist antibiotic treatments in general. By finding ways to reduce this tolerance, medical professionals could develop more effective treatments that help eliminate stubborn infections.

Future Directions

Moving forward, there is much to explore. Understanding exactly how ribosomal proteins interact with antibiotics and how bacterial translation can be manipulated is a crucial aspect of future research. This knowledge can lead to the development of new strategies for combating antibiotic-resistant bacteria.

Furthermore, the methods developed to screen for and identify compounds can be applied to other bacterial infections, expanding the potential impact of this research. By continuing to investigate these areas, researchers can contribute to the fight against antibiotic resistance, a growing global health threat.

Conclusion

Antibiotic tolerance is a challenging problem, especially with bacteria like Mycobacterium tuberculosis. By uncovering new mechanisms of resistance and identifying compounds that can counteract these processes, there is hope for improved treatments. This ongoing research underscores the importance of understanding bacterial biology and the potential for innovative solutions in the fight against infectious diseases.

Recognizing how certain proteins and processes within bacteria can be targeted offers a pathway to tackle one of modern medicine's most pressing issues: antibiotic resistance. Each step forward in this area brings us closer to more effective treatments that could save lives and improve health outcomes worldwide.

Original Source

Title: Medicinal chemistry of benzoisoxazole-4,7-dione analogues identifies the ribosomal small subunit as a target for specific mycobacterial translational fidelity

Abstract: Mycobacteria have high rates of error in the translation of glutamine and asparagine codons due to a two-step indirect tRNA aminoacylation pathway involving the essential amidotransferase GatCAB. This specific mycobacterial mistranslation is both necessary and sufficient for tolerance to the antibiotic rifampicin. Furthermore, we identified the natural product kasugamycin as a small molecule that could decrease this type of translational error, and potentiate rifampicin-mediated killing of mycobacteria, but whether other small molecules can decrease this specific type of mistranslation is unknown. We screened a library of synthetic small molecules using a pathway-specific whole-cell screen in a reporter strain of Mycobacterium smegmatis for their ability to decrease specific mycobacterial mistranslation. We synthesized 110 analogs of a parent hit compound and analyzed their bioactivity. To identify the cellular target of the compounds, we biotinylated active and inactive analogs and performed pull-down and mass-spectrometry of bound cellular proteins. We identified benzo[d]isoxazole-4,7-diones as a class of small molecules able to decrease mycobacterial mistranslation. Of the 110 analogs synthesized, we identified 10 with superior potency to the parent compound and analyzed the compounds to infer structure-activity relationships. Pull-down and mass spectrometry of bound cellular proteins identified RpS5 as a potential target of active compounds. Our study identified synthetic small molecules able to decrease mycobacterial mistranslation and confirmed that the small ribosomal subunit can be targeted to decrease mistranslation rates arising from physiologically mischarged tRNAs. Targeting mistranslation may be a potentially attractive means of targeting antibiotic-tolerant bacteria.

Authors: Babak Javid, J. Wu, S. Chaudhuri, S. C. Feid, M. Pan, Q. Kawaji, G. Liu

Last Update: 2024-10-21 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.10.20.619312

Source PDF: https://www.biorxiv.org/content/10.1101/2024.10.20.619312.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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