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Advancements in Genetic Pest Control with Synthetic Gene Drives

Scientists develop gene drives to manage pest populations and diseases effectively.

Andrew M. Hammond, I. Morianou, L. Phillimore, B. S. Khatri, L. Marston, M. Gribble, A. Burt, F. Bernardini, T. Nolan, A. Crisanti

― 6 min read


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Scientists are working on new ways to manage pests and diseases using advanced genetic tools. One of the most promising approaches involves something called synthetic gene drives. These systems can spread specific traits through populations of pests, like mosquitoes, to help control diseases such as malaria.

What are Synthetic Gene Drives?

Synthetic gene drives use techniques from genetics, particularly a method called CRISPR. This technology allows scientists to edit genes in living organisms. Gene drives can ensure that a desired trait gets passed on to nearly all offspring, unlike normal inheritance patterns where traits may not always be passed down.

In the context of pest control, gene drives can be designed to reduce the reproduction rate of a pest species. For example, researchers are looking at how to reduce the number of female mosquitoes that can reproduce, which would help in managing their populations.

The Challenge of Resistance

While gene drives show a lot of potential, they also face challenges. One major issue is the development of resistance. Just like how bacteria can become resistant to antibiotics, pests may develop genetic changes that make them less susceptible to gene drives.

Resistance can happen through natural genetic variation or through mutations that occur when the gene drive cuts the DNA. These changes can prevent the gene drive from effectively spreading its intended trait. The effectiveness of a gene drive will depend on how many resistant individuals are in the pest population and how these mutations affect their survival.

Types of Resistant Variants

Researchers have identified two types of resistance:

  1. Functional Resistance (R1): These changes restore the target gene's function, essentially making the gene drive ineffective. Individuals with these mutations may thrive despite the presence of a gene drive.

  2. Non-Functional Resistance (R2): These mutations prevent the gene drive from working but come with costs such as lower survival rates or inability to reproduce.

The researchers found that R1 Alleles can quickly take over a population when a gene drive is released, leading to the drive's failure to spread effectively. R2 alleles, while they do block the gene drive, tend to have a lesser impact on its overall effectiveness.

How Resistance Develops

The primary way new resistant variants arise is through a process called error-prone repair after the gene drive has cut the target gene. This repair process can create mutations. In mosquitoes, most of these mutations can happen early in development, and if the gene drive is present, this can lead to a higher number of resistant alleles.

Scientists have found that limiting the expression of the cutting enzyme (Cas9) to the early stages of development can reduce the number of resistant alleles produced.

Previous Findings with Gene Drives

Research teams have developed gene drives targeting the doublesex (dsx) gene in mosquitoes, specifically aimed at reducing the number of fertile female mosquitoes. Some of these gene drives have shown success in lab settings, where they can reduce mosquito populations effectively. However, when considering releases into natural populations, the risk of developing resistance becomes much more significant.

Given that wild mosquito populations are vast compared to those in laboratory settings, even a few resistant individuals may have a considerable chance of surviving and reproducing, making the gene drive less effective or completely ineffective.

Strategy for Addressing Resistance

In light of the challenges posed by resistance, researchers are working to develop genetic tools that can target multiple sites within the dsx gene. By doing so, they hope to reduce the overall chance of developing resistance. If a gene drive can operate at multiple sites, it becomes harder for a single mutation to render it ineffective.

Furthermore, researchers have created new methods to assess how quickly resistance can develop. This is essential for predicting the outcomes of releasing gene drives into the wild. By understanding previously underestimated rates of resistance development, they can design better gene drives.

Discovering New Resistance Variants

To better understand the potential for resistance against the dsx gene drive, scientists created a process to test both naturally occurring and gene drive-induced variations at high scale. They could simulate the gene drive's activity and discover rarer resistant alleles.

With the help of genetic tools, scientists can now identify how many resistant alleles may form in a population and how these could affect the gene drive's effectiveness over time.

Testing the Variants

Scientists conducted experiments in the lab to see how these resistant variants behave when a gene drive is present. They looked at how well various alleles of the dsx gene functioned and their ability to resist the gene drive.

Among the tested variants, the natural mutations present in the population were found to be susceptible to the gene drive. However, new resistant alleles generated through gene drive activity were identified, indicating that resistance could indeed evolve under selective pressure.

Some of these resistant variants were engineered to test their effects on gene drive activity. Some alleles did block the gene drive entirely, while others still allowed some gene drive activity but at reduced rates. This nuanced understanding of resistance will help researchers design better strategies for managing pests.

Multiplexed Gene Drives

To combat resistance, researchers are also developing multiplexed gene drives that target multiple sites within a gene, like the dsx gene. This design not only reduces the likelihood of resistance but also improves the chances of the gene drive spreading through the population. Theoretically, if one site gets a resistant mutation, the remaining sites can still enable the gene drive to function.

The multiplexed gene drives have shown high rates of transmission in lab experiments, performing as well or better than single-target drives. This advancement could significantly improve pest management strategies in natural settings.

Impact on Population Control

When testing the multiplexed gene drives in lab settings, researchers observed that these new drives could quickly spread through mosquito populations, effectively reducing reproductive capacity. In several trials, the new gene drives were able to decrease the population of mosquitoes significantly over a short timeframe.

By using these advanced gene drives, scientists can potentially manage mosquito populations much more effectively, leading to a reduction in the transmission of diseases like malaria.

Conclusion

The development of synthetic gene drives holds great promise for controlling pest populations and preventing the spread of diseases. However, the challenge of resistance is significant. By understanding how resistance develops, scientists can create more robust gene drives that target multiple genetic sites, thereby increasing their effectiveness in real-world scenarios.

As researchers continue to refine these tools, the potential for gene drives to help manage disease-carrying pest populations becomes more tangible. With ongoing studies and experiments, we move closer to realizing the benefits of gene drives in public health and pest management. This combined approach of understanding resistance and employing multiplexed designs will play a critical role in the future of genetic pest control.

Original Source

Title: Engineering Resilient Gene Drives Towards Sustainable Malaria Control: Predicting, Testing and Overcoming Target Site Resistance

Abstract: CRISPR-based gene drives are selfish genetic elements with the potential to spread through entire insect populations for sustainable vector control. Gene drives designed to disrupt the reproductive capacity of females can suppress laboratory populations of the malaria mosquito. However, any suppressive intervention will inevitably exert an evolutionary pressure for resistance. Here, we present a pipeline for the accelerated discovery, engineering, and testing of both natural and drive-induced variants that could reverse gene drive spread. We applied our method to stress-test a highly effective gene drive that has evaded resistance in all laboratory-contained releases to date, known as Ag(QFS)1. We showed that previously undetected resistant alleles can arise at low frequency, and discovered novel, partially resistant alleles that can perturb drive-invasion dynamics. We then engineered next-generation gene drives that can actively remove resistant alleles by targeting several highly conserved and non-overlapping sites in the female-specific exon of the doublesex gene. Our models predict that such gene drive designs could suppress large, natural populations of the malaria mosquito in the field.

Authors: Andrew M. Hammond, I. Morianou, L. Phillimore, B. S. Khatri, L. Marston, M. Gribble, A. Burt, F. Bernardini, T. Nolan, A. Crisanti

Last Update: 2024-10-21 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.10.21.618489

Source PDF: https://www.biorxiv.org/content/10.1101/2024.10.21.618489.full.pdf

Licence: https://creativecommons.org/licenses/by-nc/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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