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Advancements in Antibody Engineering: The Rise of Diabodies

Research highlights engineered diabodies for improved antibody structure and function.

Ilona Rissanen, A. Kedari, L. Hannula, R. B. Jayachandran

― 5 min read


Engineered Diabodies: AEngineered Diabodies: ANew Frontierin antibody development.Study reveals advantages of diabodies
Table of Contents

Antibodies are important proteins in our body that help us fight infections. They are made by our immune system when it senses harmful substances called Antigens. When these antigens enter our body, B cells, a type of immune cell, get activated and turn into plasma cells that produce antibodies. These antibodies then travel through our bloodstream and tissues, helping us to fend off infections and clear out infected cells.

Types of Antibodies

There are many types of antibodies, but we often talk about two main types: monoclonal antibodies (mAbs) and polyclonal antibodies. Monoclonal antibodies are special because they are created in a lab from a single type of immune cell, which allows for consistent results in their use. They have many medical applications and can be used to treat diseases like cancer and autoimmune disorders. Monoclonal antibodies are also used as tools in research.

Structure of Antibodies

Antibodies have a unique Y-shaped structure. This structure consists of two heavy chains and two light chains. The heavy and light chains are held together by bonds, and they have different parts known as domains. Each antibody has a variable region that is responsible for recognizing different antigens. The parts of the antibody that actually bind to the antigens are located in areas called complementarity-determining regions (CDRs).

Engineering Antibody Fragments

Scientists can create smaller pieces of antibodies, known as antibody fragments, for various uses. These fragments can be designed to have specific properties, and they can include FABS, single-chain variable fragments (scFvs), and others. By changing the way these fragments are linked together, researchers can create different structures that can bind to antigens effectively.

Challenges in Crystallization

One major challenge in studying antibodies is crystallization, which is the process of forming a solid crystal from a liquid solution in order to analyze the structure of the antibody-antigen complex. Full-sized antibodies can be difficult to crystallize because they are flexible, making it hard to find the right conditions for crystal growth. Scientists often have to modify antibodies into smaller fragments to help with this process.

The Role of Diabodies

Diabodies are a type of engineered antibody fragment that consist of two antigen-binding sites. These proteins tend to be more stable and can crystallize more easily than larger antibody forms. Research has shown that using diabodies can lead to a higher success rate in forming crystals compared to traditional antibody fragments.

Research on Diabodies from Human Antibodies

In this research, scientists focused on creating diabodies from two specific human antibodies: CR57, which targets a part of the rabies virus, and Imdevimab, which targets part of the SARS-CoV-2 virus. They tried different methods to produce these diabodies without adding extra linkers to connect the parts of the antibodies, aiming to see if they could create larger, more complex structures.

Observations from the Study

When they examined the structures of these diabodies, they found that the expected larger forms did not appear as frequently as they anticipated. Instead, the majority of what they produced were diabodies. This finding indicates that the type of human antibody chosen can influence the effectiveness of creating larger structures.

Crystallization Trials

During crystallization trials, the scientists tested how well the CR57 diabody and Fab fragments formed crystals in different conditions. They discovered that the diabody formed crystals much more effectively compared to the Fab fragments. This discovery suggests that the diabody structure is better suited for crystallization.

Maintaining Essential Features

Another important finding from the study was that even though the structure of the diabody differs from the Fab, the vital parts that recognize antigens were still preserved. This means that even when using a different structure, the core function of the antibody remains intact, enabling it to still target the relevant antigens.

Conclusion

The research highlights the importance of understanding how engineered antibodies, particularly diabodies, can be used in both medical and research applications. Diabodies show promising potential as scaffolds for crystallization in studies, which could lead to better insights into how antibodies interact with their targets. The findings pave the way for further exploration of antibody engineering and its applications in various fields, such as drug development and disease treatment.

Future Directions

Research will likely continue to focus on optimizing the design of antibody fragments to enhance their effectiveness. Understanding the relationship between structure and function in these proteins is essential for improving antibody-based therapies. Further studies may also explore the effects of different antibody sequences and configurations on their performance, which could deepen our knowledge of how to successfully engineer antibodies for specific uses.

Importance of Ongoing Research

As scientists learn more about antibody structures and behaviors, they can apply this knowledge to develop better treatments for various diseases. Continued exploration of antibody fragments like diabodies could lead to breakthroughs in how we approach vaccination, therapy, and biochemical research. The impact of these studies could extend beyond just understanding antibodies, potentially influencing numerous areas in biology and medicine.

Original Source

Title: Structural landscape of engineered multivalent antibody fragments and their application as crystallization scaffolds

Abstract: Multivalent recombinant antibody fragments, "multibodies", are produced by fusing antibody VH and VL domains and provide the ability to bind multiple antigens simultaneously. The oligomeric state of a multibody is believed to be determined by the length of the linker region between the V-domains, with longer linkers resulting in diabodies (60 kDa) and shorter linkers leading to the formation of triabodies (90 kDa), tetrabodies (120 kDa), and larger oligomers. In this work, we investigate this design space by engineering multibodies from the sequences of human mAbs CR57 and Imdevimab, and resolve their crystal structures at 2.25 [A] and 2.55 [A] resolution, respectively. Our results show that despite minimizing the length of the hinge region between the V-domains, these constructs form diabodies. This indicates that linker length is not the sole determinant of a multibodys oligomeric state, and additional factors such as the mAb origin species and light chain type must also be taken into account when designing multibodies. Moreover, we confirmed that the native paratope of the antibody is well- maintained in the diabody format, and conducted a proof-of-concept trial comparing the crystallization propensity of a diabody versus a Fab in antibody-antigen complex crystallization. Our results show that a diabody can promote crystallization more effectively than a Fab, demonstrating the potential of diabodies as crystallization scaffolds for antibody- antigen complexes.

Authors: Ilona Rissanen, A. Kedari, L. Hannula, R. B. Jayachandran

Last Update: 2024-10-29 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.10.29.620886

Source PDF: https://www.biorxiv.org/content/10.1101/2024.10.29.620886.full.pdf

Licence: https://creativecommons.org/licenses/by-nc/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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