The Hidden Role of Skin Microbes
Skin bacteria protect us and hold potential for new treatments.
Uyen Thy Nguyen, Rauf Salamzade, Shelby Sandstrom, Mary Hannah Swaney, Liz Townsend, Sherrie Y. Wu, J.Z. Alex Cheong, Joseph A. Sardina, Isabelle Ludwikoski, Mackinnley Rybolt, Hanxiao Wan, Caitlin Carlson, Robert Zarnowski, David Andes, Cameron Currie, Lindsay Kalan
― 7 min read
Table of Contents
- The Microbe Community on Your Skin
- Microbial Allies
- The Skin Microbiome: A Hidden Treasure
- A Look Inside the Collection
- Assessing Bacteria Interactions
- Fungal Foes
- Discovering New Bacterial Species
- Understanding How Bacteria Work
- The Importance of BGCs
- The Fight Against Antibiotic Resistance
- The Reality of Body Sites
- Final Thoughts: The Skin Microbiome's Role
- Original Source
- Reference Links
Human Skin serves as a vital barrier. It protects you from harmful substances and helps keep everything balanced inside your body. One of the key roles of your skin is to block unwanted germs from getting in. This protective barrier is supported by tiny creatures called Microbes, which include bacteria, fungi, and viruses that live on your skin. Think of them as tiny neighbors helping to fend off the bad guys!
The Microbe Community on Your Skin
Your skin covers about 30 square meters, and it comes equipped with hair, sweat pores, and other parts. This makes skin one of the largest surfaces where your body interacts with microbes. Different parts of your skin have specific environments like moisture levels and pH balance, creating unique homes for various microbes. They aren't just hanging out for fun; they actually help keep your skin healthy through various defense strategies.
Microbial Allies
The microbes on your skin also play other important roles. They help your immune system get used to the good guys and recognize the bad guys. If these friendly microbes are eating the same food as harmful ones, they make it harder for germs to invade by taking up space and resources. Some microbes even produce special molecules that can kill harmful germs directly.
For instance, one microbe, Staphylococcus lugdunensis, makes a compound called lugdunin that can zap Methicillin-resistant Staphylococcus aureus (MRSA), a nasty type of germ that’s hard to treat. Another example is Cutibacterium acnes, which is found in oily areas of your skin and produces cutimycin, known for fighting off certain germs too.
Many of the microbes on your skin are the unsung heroes of the battle against harmful bacteria!
The Skin Microbiome: A Hidden Treasure
Researchers have mostly focused on the more common microbes, often overlooking the rare ones. This is like only looking at the loudest instruments in an orchestra while ignoring the subtle notes that can create a masterpiece. There’s a whole world of less common microbes that haven’t been studied yet, potentially housing a treasure trove of useful compounds.
In fact, some researchers have even gathered a massive collection of different bacteria from various areas of the skin. This collection includes thousands of unique strains, making it much bigger and diverse than what we have seen before. They are uncovering the variety of antimicrobial substances that this microbial community can produce.
A Look Inside the Collection
Let’s dive into this collection of skin bacteria, known as EPIC! This library includes 6,540 different bacteria gathered from 1,060 various samples taken from humans and other animals. The types of samples collected came from different body parts like skin, mouth, and nose. With about 980 different skin bacteria from 136 samples, this collection is like an all-you-can-eat buffet of bacterial diversity!
The researchers took samples from 34 healthy volunteers and mapped out what kinds of microbes live on their skin. They found that the collection includes many rare strains that haven’t been part of other studies. Using creative methods, they were able to isolate these less common strains, providing a more complete picture of the skin's microbial inhabitants.
Assessing Bacteria Interactions
To test how these skin bacteria interact with potential pathogens, researchers conducted experiments. They put various bacteria together on petri dishes and saw if the skin bacteria could keep harmful germs in check. The results were quite encouraging! Many of the skin bacteria showed capabilities to inhibit the growth of various pathogens, particularly fungi.
Researchers tested almost 9,000 interactions, which sounds like a lot of contract negotiations, but in the end, they uncovered widespread antifungal activity among the skin-associated bacteria.
Fungal Foes
Among the various subjects, they found that a hefty number of skin bacteria could stop fungal Infections. The fungi Cryptococcus neoformans, Candida albicans, and Candida auris didn't stand a chance against many of these bacteria. In fact, they identified dozens of skin bacteria that could completely block the growth of these fungi.
This kind of research is particularly important because fungal infections are a big issue in many skin conditions. If these friendly bacteria can act as a defense, maybe they can help keep those nasty fungi in check.
Discovering New Bacterial Species
Using advanced sequencing technology, researchers also found several new bacterial species that are not yet in previous databases. Four of these newly identified species come from different known genera. Each of these newfound species has unique traits, including the ability to produce substances that can combat fungi.
Imagine being a scientist who finds a new superhero species in the world of bacteria! Each new species is like a new character in a comic book, complete with its own special powers against pathogenic invaders.
Understanding How Bacteria Work
The scientists looked closer at what makes these bacteria tick. They used a method called whole-genome sequencing. By analyzing the genomes, they figured out that these new species could produce one to four special substances known as biosynthetic gene clusters (BGCs). These clusters are essentially instruction manuals for the bacteria to create useful compounds.
Interestingly, the BGCs found in these new species were quite different from those in other known species. This means that the compounds they produce might be entirely new and previously undiscovered. It’s like opening a treasure chest full of hidden gems that could lead to new treatments for infections!
The Importance of BGCs
Understanding these biosynthetic gene clusters is crucial because they can guide researchers in discovering new antibiotics. The skin microbiome, with its rich collection of bacteria, may be a goldmine for new drugs that can treat infections, especially in a world where common medicines are failing due to resistance.
The Fight Against Antibiotic Resistance
Researchers also looked into the presence of antibiotic resistance genes among the bacteria in the collection. Surprisingly, they found a low prevalence of these resistance genes, suggesting that these skin microbes could produce drugs that target mechanisms different from current antibiotics.
This is good news, as it opens up new avenues for finding effective treatments that could work where existing ones fail. With bacteria evolving to resist current medications, seeking out new compounds is more important than ever.
The Reality of Body Sites
Different parts of the skin provide different environments for microbial growth. Some areas are more oily, while others are drier or moist. Based on their research, the scientists found that sebaceous sites, which are oily, are home to a wealth of biosynthetic gene clusters.
This finding means that if they want to discover more about what the skin microbiome can do, they should pay special attention to these oily areas!
Final Thoughts: The Skin Microbiome's Role
In summary, the human skin microbiome plays a key role in protecting us. The skin is not just an outer layer; it houses a dynamic community of various bacteria, many of which produce compounds that can inhibit harmful microbes. This research has revealed a rich collection of unique bacterial strains, showcasing their potential as a source for new treatments against skin infections.
As researchers continue their efforts to understand these microbes and the compounds they produce, we might discover effective ways to manage fungal infections and support our skin health. The skin microbiome is like a hidden treasure trove, waiting to be explored, with the promise of exciting new discoveries in the world of medicine!
So next time you think about your skin, remember it's not just a protective layer; it's a bustling neighborhood full of tiny defenders keeping you safe and sound.
Title: Large-scale investigation for antimicrobial activity reveals novel defensive species across the healthy skin microbiome
Abstract: The human skin microbiome constitutes a dynamic barrier that can impede pathogen invasion by producing antimicrobial natural products. Gene clusters encoding for production of secondary metabolites, biosynthetic gene clusters (BGCs), that are enriched in the human skin microbiome relative to other ecological settings, position this niche as a promising source for new natural product mining. Here, we introduce a new human microbiome isolate collection, the EPithelial Isolate Collection (EPIC). It includes a large phylogenetically diverse set of human skin-derived bacterial strains from eight body sites. This skin collection, consisting of 980 strains is larger and more diverse than existing resources, includes hundreds of rare and low-abundance strains, and hundreds of unique BGCs. Using a large-scale co-culture screen to assess 8,756 pairwise interactions between skin-associated bacteria and potential pathogens, we reveal broad antifungal activity by skin microbiome members. Integrating 287 whole isolate genomes and 268 metagenomes from sampling sites demonstrates that while the distribution of BGC types is stable across body sites, specific gene cluster families (GCFs), each predicted to encode for a distinct secondary metabolite, can substantially vary. Sites that are dry or rarely moist harbor the greatest potential for discovery of novel bioactive metabolites. Among our discoveries are four novel bacterial species, three of which exert significant and broad-spectrum antifungal activity. This comprehensive isolate collection advances our understanding of the skin microbiomes biosynthetic capabilities and pathogen-fighting mechanisms, opening new avenues towards antimicrobial drug discovery and microbiome engineering.
Authors: Uyen Thy Nguyen, Rauf Salamzade, Shelby Sandstrom, Mary Hannah Swaney, Liz Townsend, Sherrie Y. Wu, J.Z. Alex Cheong, Joseph A. Sardina, Isabelle Ludwikoski, Mackinnley Rybolt, Hanxiao Wan, Caitlin Carlson, Robert Zarnowski, David Andes, Cameron Currie, Lindsay Kalan
Last Update: 2024-11-04 00:00:00
Language: English
Source URL: https://www.biorxiv.org/content/10.1101/2024.11.04.621544
Source PDF: https://www.biorxiv.org/content/10.1101/2024.11.04.621544.full.pdf
Licence: https://creativecommons.org/licenses/by-nc/4.0/
Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.
Thank you to biorxiv for use of its open access interoperability.