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How Proteins Influence miRNA Packing in EVs

Researchers examine how proteins determine the fate of miRNAs in extracellular vesicles.

― 5 min read


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Extracellular Vesicles (EVs) are tiny bubbles that cells spit out into the space around them. Think of them as little packages carrying information that cells send out to each other. These packages vary in size and type. For example, some are small, called exosomes, measuring about the size of a tiny virus, while others, known as microvesicles, are a bit bigger.

How Do EVs Work?

These little packages aren’t just for show. They carry important messages in the form of molecules, like proteins and RNA. When cells release these vesicles, nearby cells can pick them up. It’s like sending text messages or emails, but instead, it’s cellular communication! With this capability, EVs can influence how cells behave and even modify their gene expression during different health conditions or diseases.

The Mystery of MiRNAs

One type of molecule that EVs can carry is called miRNA (microRNA). MiRNAs are tiny strands of RNA that play a big role in controlling gene activity. You might think of them as the “traffic lights” for genes, telling them when to stop or go. Interestingly, the content carried in EVs can be quite different from what’s in the cell that made them. The process that determines which miRNAs go into EVs is selective and complex, like a very picky club bouncer deciding who gets in and who doesn’t.

Who’s in Charge Here?

Researchers believe there are several players involved in deciding which miRNAs get loaded into EVs. It looks like there’s a multi-protein team that sorts miRNAs for these vesicles. While we know that some proteins help in this sorting, many details remain a bit of a mystery.

One of the first proteins identified that helps load miRNAs into EVs is hnRNPA2B1. It has a knack for recognizing specific sequences in miRNAs and making sure they get included in the vesicles. Another important player is called SYNCRIP. This protein has a particular affinity for some miRNAs and guides them into EVs made by liver cells.

The Dance of miRNAs and Proteins

Now, here’s where it gets interesting: While SYNCRIP is doing its job loading certain miRNAs, another protein, PCBP2, is lurking around. It also has an important role to play, especially in retaining some miRNAs inside the cell instead of letting them escape in EVs.

PCBP2 seems to prefer binding to miRNAs that have something called a CELL motif. It’s as if SYNCRIP and PCBP2 are in a dance, each influencing the fate of these miRNAs. When PCBP2 is around, it can interrupt SYNCRIP’s loading activity, preventing those miRNAs from leaving the cell. Imagine it as a tug-of-war where both proteins are trying to win control over the same miRNA.

Hunting for Connections

To dig deeper into how these proteins interact with miRNAs, researchers decided to look at specific miRNAs, particularly miRNA-155-3p. They designed experiments where they could catch these proteins in action, pulling them down from the cells and checking who was hanging out with whom.

In their experiments, they found that PCBP2 sticks to miRNA-155-3p, especially when it has its CELL motif intact. However, if the CELL motif is removed, PCBP2 loses its grip. Interestingly, SYNCRIP still managed to hang out with miRNA-155-3p, even if the CELL motif was changed.

A Game of Give and Take

This gave rise to the idea that SYNCRIP may be essential for PCBP2’s binding. When SYNCRIP is not around, PCBP2 doesn’t seem to bind well to miRNA-155-3p. But when SYNCRIP is present, PCBP2 jumps on board for the ride.

To test this theory further, scientists tried mutating different parts of the miRNA sequence. They found that tweaking the hEXO motif (another key part) could also affect PCBP2’s ability to bind. By changing bits and pieces of the miRNA, they were able to see how the interactions changed, like rearranging the furniture in a room to see how it affects the flow of traffic.

The Big Reveal

What they ultimately discovered is that both SYNCRIP and PCBP2 are crucial in determining where miRNAs end up. If PCBP2 is around, it keeps certain miRNAs inside the cell, pulling rank over SYNCRIP’s efforts to export them.

Thus, the research highlighted a fascinating balance between these proteins and their influences on miRNA fate. One could picture it as a sitcom, where SYNCRIP and PCBP2 are the main characters, both vying for the spotlight and trying to get the best outcome for their “friends,” the miRNAs.

Getting to the Bottom of it All

Researchers wanted to verify if PCBP2’s influence extended beyond just miRNA-155-3p. They conducted further studies and found that it indeed affects several other miRNAs with similar motifs. They gathered data to see which miRNAs were present more in EVs when PCBP2 was absent. The results showed that without PCBP2’s restraining influence, more miRNAs made their way into the EVs.

The Takeaway

In conclusion, this study shines a light on the intricate dance of proteins that determine the fate of miRNAs in cells. PCBP2 and SYNCRIP not only play crucial roles in miRNA loading and retention but do so in a way that can either promote or hinder the exportation process.

With all this knowledge about how cells talk to each other through tiny vesicles, scientists are getting closer to understanding not just cellular communication, but also how we might manipulate these processes for new therapies in various diseases.

While the knowledge of these interactions is progressing, there’s still a lot more to uncover. Who knows what other surprises await in the wonderful world of cellular communication? Stay tuned!

Original Source

Title: Negative regulation of miRNAs sorting in EVs: the RNA-binding protein PCBP2 impairs SYNCRIP-mediated miRNAs EVs loading

Abstract: While it is accepted that Extracellular Vesicles (EVs)-mediated transfer of microRNAs contributes to intercellular communication, the knowledge about molecular mechanisms controlling the selective and dynamic miRNA-loading in EVs is still limited to few specific RNA-binding proteins interacting with sequence determinants. Moreover, although mutagenesis analysis demonstrated the presence/function of specific intracellular retention motifs, the interacting protein/s remained unknown. Here, PCBP2 was identified as a direct interactor of an intracellular retention motif: RIP coupled to RNA pull down and proteomic analysis demonstrated that it binds to miRNAs embedding this motif and mutagenesis proved the binding specificity. Notably, PCBP2 binding requires SYNCRIP, a previously characterized miRNA EV-loader as indicated by SYNCRIP knock-down. SYNCRIP and PCBP2 may contemporarily bind to miRNAs as demonstrated by EMSA assays and PCBP2 knock-down causes EV-loading of intracellular microRNAs. This evidence highlights that multiple proteins/miRNA interactions govern miRNA compartmentalization and identifies PCBP2 as a dominant inhibitor of SYNCRIP function.

Authors: Francesco Marocco, Sabrina Garbo, Claudia Montaldo, Alessio Colantoni, Luca Quattrocchi, Gioele Gaboardi, Carla Cicchini, Gian Gaetano Tartaglia, Cecilia Battistelli, Marco Tripodi

Last Update: Nov 15, 2024

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.11.15.623754

Source PDF: https://www.biorxiv.org/content/10.1101/2024.11.15.623754.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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