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The Role of Prokaryotes in Ocean Health

Study reveals how prokaryotes adapt to seasonal changes in oceans.

Dennis Amnebrink, Ashish Verma, Daniel Lundin, Johan Wikner, Jarone Pinhassi

― 7 min read


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Table of Contents

In nature, tiny organisms called Prokaryotes play a big role in breaking down materials and recycling Nutrients. These organisms are like the clean-up crew of the ocean, helping to transform and use dissolved organic matter (DOM). Over the year, especially in temperate oceans, their populations and behaviors change with the seasons.

During the cold winter months, certain types of prokaryotes, particularly those that convert ammonia, are more common. Then, when spring arrives and phytoplankton blooms, different bacterial groups take advantage of the organic materials that get released. As summer comes, you see another change where the microbes that can handle lower nutrient levels start to thrive. All these seasonal shifts in who’s eating what mean that how elements move around in the ocean changes too.

What Affects Prokaryotes?

Temperature, nutrients, and DOM are the main factors shaping these tiny communities in the sea. The growth and health of bacteria depend heavily on how much DOM is available and its quality. In the Baltic Sea, for example, DOM levels and temperature tend to rise together during the summer when plants produce lots of food. In the winter, nutrients are high, while they dip in the summer. This makes figuring out how each of these factors affects prokaryotes tricky. Thankfully, scientists can set up experiments that mimic different environmental conditions to see how prokaryotes respond.

Metatranscriptomics: A Powerful Tool

One of the best ways to study how marine microbes react to environmental changes is through a method called metatranscriptomics. This technique looks at how genes are turned on or off, helping scientists understand how these tiny life forms adapt to different conditions. For instance, when nutrients change, bacteria may express different genes to get the food they need. This method has even helped to connect gene behavior to larger processes, like how nitrogen is cycled in the ocean.

When the industrial revolution brought changes to the ocean, this method highlighted how marine microbes adjusted their genetic behavior to cope with stress. These findings are crucial for grasping what makes these communities tick and how they manage nutrient cycling.

Recent Experiment in the Baltic Sea

In a recent study, scientists set up a large-scale experiment in the cold Baltic Sea. They studied how temperature and DOM levels affected bacterial growth and behavior. The experiment started in March, mimicking winter conditions and gradually introducing elements of early summer.

The setup had different treatments: one with no added DOM at the natural temperature, one with DOM added at the same cold temperature, one at a warmer temperature with no DOM, and one at the warmer temperature with DOM. By adjusting these factors, the scientists could observe how each impacted bacterial growth and community make-up.

Keeping Track of Growth

During the experiment, scientists measured various things. They looked at how much bacteria were present and how quickly they were growing. They also checked the water's chemical quality. Understanding all these details helped reveal how the different treatments influenced the microbes.

For example, in the cold, natural conditions, chlorophyll levels – which indicate plant life – increased over time, while in the warmer treatments, levels fluctuated. This was a big clue showing that temperature impacts how algae and bacteria interact.

Gathering the Data

To learn more about the microbes and their genetic activity, researchers collected samples at specific times during the experiment. This included taking water, filtering it to capture the microbes, and preserving the samples for analysis. The goal was to identify which genes were active under different conditions.

After collecting samples, the scientists extracted the RNA from the microbes. They used advanced techniques to make sure they only looked at the active genes, removing anything that wasn't useful for understanding the microbes’ responses.

Data Analysis

The data from these experiments were analyzed using a set of computer tools. These tools helped scientists see how the different treatments affected which genes were turned on. By comparing different groups, they could find patterns and understand how temperature and DOM influenced the microbial communities.

After looking closely at the results, scientists did a fancy analysis called PCA to illustrate how the different treatments separated from one another based on gene expression. They found clear patterns that correlated with the temperature and DOM levels in each treatment.

Key Findings

In looking at how prokaryotic communities changed, the researchers found that certain groups thrived in specific conditions. For example, in the colder environments with lower DOM, certain types of Archaea were abundant. In contrast, when DOM was added, different groups dominated, hinting that the microbes were responding to the food source and temperature.

The analysis also showed that as Temperatures rose, other groups like the SAR11 bacteria became more common, revealing how temperature changes can lead to shifts in community structure.

The Importance of DOM

DOM played a significant role in driving the dynamics of microbial communities. When the scientists added DOM, specific bacterial groups showed higher levels of activity, indicating that they were capable of utilizing the nutrients provided. This suggests that organic matter release from living organisms can have direct impacts on the microbial life that follows.

Interestingly, even in the presence of DOM, some bacteria performed well without it, suggesting they had the resilience to adapt to the changing food sources.

How Temperature Impacts Microbial Life

As temperatures rose in the experiment, the researchers noted that many bacteria, particularly those associated with phytoplankton, responded well. This was expected as warmer waters often favor the growth of certain microbes. This experiment illustrated how temperature can significantly influence which types of bacteria thrive.

In environments where nutrients were lower, bacteria able to handle those conditions became more popular, showing how changes in food availability could alter community structure.

What Did the Genetic Data Show?

Delving into the genetic data revealed a treasure trove of information about how prokaryotic communities react to changes in their environment. Scientists noticed that certain genes associated with energy metabolism and nutrient uptake were more active under specific conditions.

For example, genes related to ammonia transport were particularly active in colder conditions, while at warmer temperatures, the focus shifted to processing different types of nutrients. This highlights how adaptable these tiny organisms really are.

Conclusions

Overall, the study illustrated the complex interactions between temperature and DOM in shaping microbial communities in marine environments. By manipulating these factors, the scientists gained valuable insights into how communities respond to changing conditions.

The prokaryotic community demonstrated resilience, with many organisms shifting their activity to adapt to the available resources. This adaptability is critical for understanding how marine ecosystems function, especially as they face changes from climate events.

The Bigger Picture

Understanding how these microbial communities work is not just an academic exercise. These tiny organisms play essential roles in nutrient cycling in oceans, which affects larger food webs and overall ocean health. As we face climate change and human-induced impacts, learning about the adaptability and resilience of prokaryotic life can help predict how marine ecosystems will respond in the future.

The findings from this study are a reminder of the intricate connections within ecosystems and the importance of studying even the smallest players in the game. After all, if they can handle the heat (or cold), maybe we can learn a thing or two about adapting to change ourselves!

Original Source

Title: Temperature and dissolved organic matter shape marine prokaryotic activity and gene expression in a sub-arctic sea

Abstract: Temperature and dissolved organic matter (DOM) are important drivers of microbial activity, but their effects, alone or in combination, on the physiological responses of sub-arctic prokaryotic assemblages remain poorly understood. In a northern Baltic Sea one-month mesocosm experiment, we therefore exposed a coastal microbial community to temperature and nutrient regimes representative of winter and early summer (i.e., 1{degrees}C and 10{degrees}C, with and without DOM additions) in a 2x2 factorial design. Midway through the experiment, specific growth rates were highest for the 10{degrees}C plus DOM treatment (TN; [~]2.5 day-1), comparable for the 1{degrees}C plus DOM (N) and the 10{degrees}C (T) treatments at [~]1.0 day-1; and low for the control (1{degrees}C, no DOM enrichment [C]; 0.2 day-1). Taxonomic analysis of metatranscriptomes uncovered broad treatment specific responses, and a PERMANOVA on the 182,618 transcribed genes revealed statistically significant effects of both temperature and DOM, and significant interaction effects between the two (altogether involving 18% of genes). Significant differences in transcription identified by EdgeR analysis included Nitrosopumilus genes for ammonium uptake and ammonia oxidation in the 1{degrees}C mesocosms (C, N), membrane transporters for small organic acids in the N-treatment, genes for nitrogen and phosphorus assimilation along with molecular chaperones in the T-treatment, and dominance of Oceanospirillales genes for energy and growth metabolism in the TN-treatment. These metatranscriptomic responses were associated with changes in e.g. prokaryotic growth rates and growth efficiency, providing clues to how successional changes in community composition and metabolism are directed by temperature and DOM as central factors underlying environmental change. ImportanceIt is recognized that increases in temperature and dissolved organic matter loading are key to understanding how climate change will influence polar ecosystems. Still, little is known of the effects of these factors on the physiological responses of Arctic prokaryotes. Since prokaryotes are principal drivers of biogeochemical cycles, we investigated how temperature and dissolved organic matter influence prokaryotic transcriptional responses in taxonomy and metabolic pathways. The metatranscriptomics analyses uncovered broad treatment specific responses linked with changes in prokaryotic community composition, growth rates, and growth efficiency. Yet, and importantly, the expression of most metabolic functions remained stable, suggesting a pronounced functional resilience of the prokaryotic community enabled by shifts in the dominance of different taxa. This emphasizes the large potential and importance of identifying the metabolic functions that underlie the divergence of prokaryotic communities in response to environmental changes projected to alter some of the most vulnerable marine environments.

Authors: Dennis Amnebrink, Ashish Verma, Daniel Lundin, Johan Wikner, Jarone Pinhassi

Last Update: 2024-11-17 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.11.13.623445

Source PDF: https://www.biorxiv.org/content/10.1101/2024.11.13.623445.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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