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Exploring the Role of Genes in Microglial Function and Autism

Research examines how specific genes impact microglia in autism spectrum disorder.

Martin Kampmann, O. M. Teter, A. McQuade, V. Hagan, W. Liang, N. M. Draeger, S. M. Sattler, B. B. Holmes, V. C. Castillo, V. Papakis, K. Leng, S. Boggess, T. J. Nowakowski, J. Wells

― 5 min read


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Table of Contents

Autism Spectrum Disorder (ASD) is a group of conditions that affect how people think, communicate, and interact. It is marked by a range of difficulties, particularly in social situations and communication, as well as repetitive behaviors and limited interests. Each person with autism shows a unique combination of challenges and strengths.

Both genetics and environment influence the risk of developing ASD. Studies show that there are shared trends in brain development among people with ASD, including changes in brain cells called microglia and synaptic density, which is how brain cells connect and communicate.

Microglia are special cells in the brain that act as the brain's immune defense. They help keep the brain healthy by removing waste and supporting brain cell connections. It's still unclear whether the changes in microglia seen in people with ASD are due to problems in the brain or if the microglia themselves are inherently different.

Given how complex brain development is, understanding how different factors contribute to the unusual brain growth seen in ASD is challenging. Nevertheless, advances in genetic studies have identified key genes linked to ASD risk. Researchers are using new techniques, like CRISPR, to study how these genes affect the brain cells involved in autism. One focus is on how certain genes impact microglia's job of maintaining healthy brain function.

Research Purpose and Methods

The aim of this research is to look into how specific ASD-related genes affect microglia, especially their ability to manage synapses, which are the connections between brain cells. We devised a method using flow cytometry, which allows for the analysis of individual microglia samples, to evaluate how these genes impact synaptic material uptake.

To perform the study, we used human stem cells to create a lab model of microglia and Neurons. We co-cultured these cells and developed a way to measure how well the microglia take in synaptic material from the neurons. This method enables us to assess many genes at once to see which ones influence microglial functions.

Cell Culturing Techniques

Human Stem Cell Culture

Human stem cells were grown in a special environment until they reached a certain density. Once they were ready, they were treated with solutions that help them detach from their containers and were then counted before being put back into new growth conditions.

Creating Microglia from Stem Cells

We created specific microglia from stem cells by introducing special genes that could be controlled by adding certain substances to the cells. These modified cells were then allowed to grow and differentiate into microglia.

Developing Neurons from Stem Cells

Similarly, we transformed stem cells into neurons by introducing a gene that directs them to take on a neuronal role. The cells underwent specific treatments over several days to encourage this transformation.

Microglia and Neuron Interaction

Once both types of cells were developed, we combined them to study how microglia interact with neurons. We were particularly interested in looking at how microglia engage with synaptic material and what factors influence this process.

Measuring Microglial Uptake of Synaptic Material

To evaluate how microglia take up synaptic material, we designed a specific experimental setup. The neuron cells were modified to express a special protein that would mark the synaptic material with a fluorescent tag. When we cocultured these neurons with microglia, we could track how much of the synaptic material the microglia took in using flow cytometry.

Findings from the Research

Key Genes Identified

From our experiments, we identified several genes whose knockdown (or reduction in activity) influenced how microglia took up synaptic material. One gene of particular interest was ADNP, which when reduced, led to increased uptake of synaptic material by microglia.

Impact of ADNP on Microglial Function

Through our analysis, we discovered that the knockdown of ADNP altered several microglial functions. This included changes in how microglia processed signals from their environment, as well as how they interacted with their surroundings.

Differences in Microglial Behavior

When we studied microglia with reduced ADNP levels, we found that they showed increased motility, meaning they were more active and responsive in their environment. This increase in movement likely contributed to the observed rise in synaptic material uptake.

Examination of WNT Signaling

In addition to focusing on ADNP, we investigated how WNT signaling pathways affected microglial behavior. Our findings suggested that WNT signaling plays a role in how microglia respond to neurons and take up synaptic material.

Conclusions from the Study

This research highlights the significant roles that specific genes, particularly ADNP, play in how microglia engage with synaptic material. It also sheds light on the mechanics of microglial function, which may be disrupted in conditions like ASD due to genetic factors. We're considering the implications of these findings for future research and potential therapeutic approaches for autism.

Future Directions

Moving forward, it will be crucial to further explore other genes linked to ASD and their specific contributions to microglial functions. Moreover, ensuring that our findings are applicable to a broader understanding of ASD will be essential for translating this research into meaningful interventions.

Summary

In summary, this research presents a new method for studying how microglia from human stem cells interact with neurons and take up synaptic material. We identified several ASD-related genes that influence microglial function, with ADNP being a central focus. The outcomes of this study could provide insights into the biological mechanisms underlying ASD and highlight potential pathways for future therapeutic strategies.

By establishing a better understanding of how microglia operate in the context of ASD, we can pave the way for new research avenues and treatment options that may directly benefit individuals on the autism spectrum.

Original Source

Title: CRISPRi-based screen of Autism Spectrum Disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning

Abstract: Autism Spectrum Disorders (ASD) are a set of neurodevelopmental disorders with complex biology. The identification of ASD risk genes from exome-wide association studies and de novo variation analyses has enabled mechanistic investigations into how ASD-risk genes alter development. Most functional genomics studies have focused on the role of these genes in neurons and neural progenitor cells. However, roles for ASD risk genes in other cell types are largely uncharacterized. There is evidence from postmortem tissue that microglia, the resident immune cells of the brain, appear activated in ASD. Here, we used CRISPRi-based functional genomics to systematically assess the impact of ASD risk gene knockdown on microglia activation and phagocytosis. We developed an iPSC-derived microglia-neuron coculture system and high-throughput flow cytometry readout for synaptic pruning to enable parallel CRISPRi-based screening of phagocytosis of beads, synaptosomes, and synaptic pruning. Our screen identified ADNP, a high-confidence ASD risk genes, as a modifier of microglial synaptic pruning. We found that microglia with ADNP loss have altered endocytic trafficking, remodeled proteomes, and increased motility in coculture.

Authors: Martin Kampmann, O. M. Teter, A. McQuade, V. Hagan, W. Liang, N. M. Draeger, S. M. Sattler, B. B. Holmes, V. C. Castillo, V. Papakis, K. Leng, S. Boggess, T. J. Nowakowski, J. Wells

Last Update: 2024-11-17 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.06.01.596962

Source PDF: https://www.biorxiv.org/content/10.1101/2024.06.01.596962.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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