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New Insights into Influenza Vaccines and Antibodies

Research reveals potent antibody DA03E17 could enhance flu vaccine effectiveness.

Gyunghee Jo, Seiya Yamayoshi, Krystal M. Ma, Olivia Swanson, Jonathan L. Torres, James A. Ferguson, Monica L. Fernández-Quintero, Jiachen Huang, Jeffrey Copps, Alesandra J. Rodriguez, Jon M. Steichen, Yoshihiro Kawaoka, Julianna Han, Andrew B. Ward

― 6 min read


Flu Vaccine Breakthroughs Flu Vaccine Breakthroughs Unveiled evolving influenza strains. DA03E17 antibody shows promise against
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Influenza viruses, commonly known as the flu, are a significant health concern around the world. Each year, they are responsible for a staggering number of hospital visits and deaths. Estimates suggest that seasonal flu causes between 290,000 to 650,000 respiratory deaths annually, along with millions of cases of severe illness. This is no small feat for a virus that often gets dismissed as just a bad cold.

Despite a short break during the COVID-19 pandemic, flu cases have bounced back to their normal levels, showing that these tricky viruses aren't going down without a fight. Currently, two main types of influenza A viruses, H1N1 and H3N2, along with influenza B viruses are circulating. However, the B/Yamagata lineage seems to have taken an extended vacation and hasn’t been spotted since March 2020.

The Ever-Changing Face of Influenza A Viruses

Influenza A viruses are particularly known for their swift changes, almost like a chameleon. This rapid evolution leads to new variants that can confuse the immune system and create potential pandemic risks. For example, a recently identified change in H3N2 viruses introduced a new sugar coating (N-glycosylation site) at a specific spot on its surface protein, which can obscure the virus from Antibodies that typically recognize it. This clever trick can make it harder for our immune systems and treatments to work effectively.

To make things even more interesting, a highly pathogenic strain of avian influenza known as H5N1 is currently spreading among cattle in the United States. This strain has raised alarms because it has jumped to humans, proving that some viruses have a knack for making unexpected appearances.

How Influenza Does its Dirty Work

Influenza viruses rely on surface proteins, namely neuraminidase (NA) and hemagglutinin (HA), to infiltrate host cells. NA works like a pair of scissors, snipping off sugars from the surface of cells to help new virus particles escape, while HA helps the virus attach to host cells. Because of its vital role in the viral life cycle, NA has become a common target for antiviral medications, like the well-known Tamiflu.

However, the current flu Vaccines mainly focus on generating antibodies against HA. While these may reduce severe illness, they often miss preventing infections due to HA’s rapid changes, which mean vaccines need updating every year. On the flip side, NA changes at a slower pace, making it an attractive target for vaccines that could provide broader protection.

The Search for Super Antibodies

To improve influenza vaccines, researchers are looking to identify unique features of broadly protective antibodies in different individuals. This journey is crucial to designing effective vaccines that work against various flu strains. A highly conserved region in HA, known as the HA stem, often attracts these types of antibodies.

In a notable discovery, researchers identified human monoclonal antibody DA03E17. This superhero of antibodies was isolated from a person infected with H1N1 during the 2015-2016 flu season. DA03E17 showed incredible versatility, binding to NAs from multiple influenza A and B strains, neutralizing them in lab tests, and even providing protection in live animal models. However, the exact target site of DA03E17 was still a mystery waiting to be solved.

Cryo-EM: The Microscopic Detective

To uncover the secrets of DA03E17, scientists used a technique called cryo-electron microscopy (cryo-EM). This advanced imaging method allowed them to visualize how DA03E17 binds to NA from different viruses. The findings revealed that DA03E17 can latch onto variants even when they have mutations that typically resist treatments like Tamiflu. This impressive ability makes DA03E17 a potential candidate for future therapies against flu viruses.

The structural analysis showed that DA03E17 binds intricately to NA, blocking its active site. This blockage is similar to how sialic acid, a natural sugar found on cell surfaces, binds to NA, mimicking the natural interaction. It turns out, DA03E17 can fool the virus into thinking it’s dealing with a sugar instead of a robust antibody.

The Wide Reach of DA03E17

DA03E17 isn’t just effective against typical flu strains; it has also shown a strong affinity for the NA from the H5N1 strain currently circulating in cattle. Given its versatility, DA03E17 could be part of a new defensive strategy if H5N1 were to spread more broadly in humans.

The ongoing evolution of H3N2 strains and the challenge of making vaccines that match circulating viruses highlight the need for antibodies that can keep pace with these changes. Evidence suggests that DA03E17’s ability to bind to drifted H3N2 is due to its unique mechanism of accommodating changes in the virus structure without losing its grip.

The Importance of Antibody Evolution

In looking at how these antibodies work, scientists have found that long CDR H3s with specific motifs, like the DR motif found in DA03E17, are crucial for targeting the NA active site effectively. They searched through a massive dataset of human antibody sequences and found that many have the potential to develop into broadly protective antibodies against influenza. This is hopeful news for future vaccine designs.

While thousands of human antibodies targeting HA exist, the number targeting NA remains significantly lower. This discrepancy reveals a gap in our understanding of how the immune response can effectively tackle the NA portion of the virus. By focusing on these NA-specific antibodies, researchers hope to pave the way for better strategies against influenza.

Antibodies on the Front Lines

In summary, the discovery of DA03E17 and its structural characteristics presents a new frontier in the quest for effective influenza vaccines. This antibody stands out for its ability to bind to various influenza strains, demonstrating potential for broad protection and therapeutic applications.

The findings underscore the importance of learning how to generate antibodies that can mimic natural interactions with the virus. Researchers are optimistic that understanding these mechanisms could lead to innovative vaccines capable of providing immunity against diverse influenza strains, ultimately making the world a safer place from seasonal outbreaks.

Conclusion: The Fight Against Influenza

Influenza viruses remain a formidable opponent in the realm of global health. However, with advancing research and breakthroughs in antibody discovery, there is hope on the horizon. By unlocking the secrets of antibodies like DA03E17, scientists are taking steps toward creating universal vaccines that could help protect populations from the ever-evolving influenza threat. After all, in the battle against viruses, knowledge is power, and every antibody counts!

With humor, innovation, and dedication, we move closer to understanding how we can outsmart these crafty viruses and continue to keep society healthy. After all, if a virus thinks it can just keep changing and evading our defenses, it might need to think again!

Original Source

Title: Structural basis of broad protection against influenza virus by a human antibody targeting the neuraminidase active site via a recurring motif in CDR H3

Abstract: Influenza viruses evolve rapidly, driving seasonal epidemics and posing global pandemic threats. While neuraminidase (NA) has emerged as a vaccine target, shared molecular features of NA antibody responses are still not well understood. Here, we describe cryo-electron microscopy structures of the broadly protective human antibody DA03E17, which was previously identified from an H1N1-infected donor, in complex with NA from A/H1N1, A/H3N2, and B/Victoria-lineage viruses. DA03E17 targets the highly conserved NA active site using its long CDR H3, which features a DR (Asp-Arg) motif that engages catalytic residues and mimics sialic acid interactions. We further demonstrate that this motif is conserved among several NA active site-targeting antibodies, indicating a common receptor mimicry strategy. We also identified potential antibody precursors containing this DR motif in all donors of a healthy human donor BCR database, highlighting the prevalence of this motif and its potential as vaccine targeting. Our findings reveal shared molecular features in NA active site-targeting antibodies, offering insights for NA-based universal influenza vaccine design.

Authors: Gyunghee Jo, Seiya Yamayoshi, Krystal M. Ma, Olivia Swanson, Jonathan L. Torres, James A. Ferguson, Monica L. Fernández-Quintero, Jiachen Huang, Jeffrey Copps, Alesandra J. Rodriguez, Jon M. Steichen, Yoshihiro Kawaoka, Julianna Han, Andrew B. Ward

Last Update: 2024-12-01 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.11.26.625467

Source PDF: https://www.biorxiv.org/content/10.1101/2024.11.26.625467.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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