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New Insights on Plant Viruses in Australia

Study reveals hidden plant viruses in wildlife, impacting agriculture.

Jackie Mahar, Jonathon C. O. Mifsud, Kate Van Brussel, Anna E. Lachenauer, Erin Harvey, Olivia M. H. Turnbull, Stefanie Bonat, Thomas M. Newsome, Annabelle Olsson, Antje Chiu-Werner, Menna E. Jones, Edward C. Holmes, Solomon Maina

― 5 min read


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Table of Contents

Viruses can be a big problem for plants, especially in agriculture. When viral diseases hit crops, it can lead to reduced growth and poor harvests. This issue is getting worse due to factors like climate change, global trade, and pests that can resist pesticides. One group of viruses that causes significant harm is called tobamoviruses. These viruses are known to infect many types of plants and can severely hurt crops.

What Are Tobamoviruses?

Tobamoviruses belong to the Virgaviridae family and can be found in various plants. These viruses have a unique structure that allows them to spread easily among plants. Tobamoviruses are particularly dangerous for plants like tomatoes and cucumbers. For example, the tomato brown rugose fruit virus and cucumber green mottle mosaic virus are two troublesome tobamoviruses that have affected crops and caused financial losses for farmers.

The Spread of Viruses

Australia has a unique agricultural landscape since many crops were introduced only in the last few hundred years. This means that many harmful viruses which affect crops in other countries may not yet be present in Australia, or they have only arrived recently. Unfortunately, global trade can introduce these viruses when infected seeds or plants are imported from other countries.

In addition to trade, viruses can also jump from wild plants to cultivated crops. As farming increases, the chances of this happening also rise. This is why understanding which viruses exist in local plants is crucial for managing crop diseases. Studies have shown that some viruses can even be passed through animal droppings, which adds another layer of complexity to managing these threats.

A Surprising Discovery

Recently, researchers studying animal viruses in Australia found ribgrass mosaic virus in Wild Animals. This was quite a surprise since the virus was previously thought to be exotic to Australia. Ribgrass mosaic virus has a broad range of plant hosts, which makes it very concerning for Australian agriculture. It has relatives that are known plant pathogens that can cause serious damage to crops.

How Viruses Spread Between Plants

Tobamoviruses are notorious for spreading easily, whether it’s through direct contact with infected plants or through seeds. They can survive in soil for months, making them difficult to get rid of once they take hold. The only way to control these viruses is usually to destroy the infected plants and sanitize the soil.

Because treatments are lacking, early detection of these viruses is crucial. Australia currently relies on visual inspections and specific tests on imported plants and seeds to catch these viruses before they can spread. Still, there’s a need for new methods that can detect unknown viruses.

New Surveillance Strategy

As a response to this need, researchers have started to look into animal gut content as a way to catch new viral threats. By analyzing the total RNA from animals, they can uncover viruses that may not yet be known or that could be lurking in the environment.

This approach not only helps detect the presence of tobamoviruses but also sheds light on the relationships between these viruses and the potential risks they pose to Australia's horticultural industry.

The Research Process

The researchers used samples collected from various animals across Australia to perform their study. They extracted RNA from the animals' gut content and then sequenced it to identify the presence of tobamoviruses. This process revealed five different tobamovirus species, including one thought to be exotic and several new ones.

The gathered data was analyzed to see how the viruses relate to each other and what that means for Australia. The study found that some of these viruses are already in wild animals, which raises concerns about how they may transfer to crops.

Findings on Viruses

Among the tobamoviruses detected, one was ribgrass mosaic virus, which had been previously considered exotic. The presence of this virus in Australian wildlife suggests that it might not be as isolated as once thought. Two other novel viruses were found, both of which do not closely resemble any known tobamoviruses, making it hard to predict their impact on plants.

Additionally, the researchers found that a known tobamovirus, TMGMV, is not alarming because it has been in Australia for a long time and is well-studied.

Implications for Agriculture

The presence of these tobamoviruses in wildlife is significant for several reasons. First, it points to the possibility of viruses jumping from wild plants to cultivated crops. The fact that some of these viruses are in wild animals suggests they could easily spread to crops through contact with animals or contaminated tools and equipment.

The researchers noted that additional studies are needed to understand the potential hosts of these newly discovered viruses and their impact on agriculture. There is also a clear need for better methods to track how these viruses move through the environment.

Conclusion

In conclusion, identifying tobamoviruses in animal gut content opens up new avenues for studying and managing plant viruses. The findings show that monitoring wildlife can be a valuable part of a broader strategy to protect crops from viral infections.

With ongoing global trade and climate changes, keeping an eye on these threats is crucial for protecting the future of agriculture. By understanding the ecological connections between wildlife and crops, we can create better strategies to manage and prevent crop losses due to viruses.

Meanwhile, as we deal with plant viruses in agriculture, let’s hope our crops stay healthy because no one wants to eat a tomato that looks like it’s been through a rough night!

Original Source

Title: Detection of exotic biosecurity threat ribgrass mosaic virus and novel tobamoviruses through metatranscriptomic sequencing of animal gut content

Abstract: Ribgrass mosaic virus (RMV) and related viruses of the genus Tobamovirus (Virgaviridae) are cruciferous plant pathogens that represent a threat to global horticultural systems. In Australia, they are considered exotic biosecurity threats, and an incursion of these viruses would require rapid and strict control efforts. However, current surveillance methods for these viruses are limited. We examined whether RMV and related tobamoviruses could be detected by deep sequencing of gut metatranscriptomes of vertebrate animals and ticks. Using this method, we discovered that RMV, as well as a novel relative of RMV, and two highly diverse novel tobamoviruses are present in Australia. RMV was detected in multiple sites in both the Australian Capital Territory (ACT) and Tasmania, two regions separated by approximately 700km of land and 200km of water. The novel relative of RMV was detected in the ACT and New South Wales (NSW), while the highly divergent novel tobamoviruses were each detected in a single state, NSW and Queensland (QLD). In addition, Tobacco mild green mosaic virus, which is already known to be present in Australia, was detected in QLD using this method. This work highlights the potential utility of metatranscriptomic sequencing of wild animal gut for the surveillance of biosecurity threats to native and agricultural plant species. ImportancePlant viruses can have devastating impacts on global horticulture. Tobamoviruses (family Virgaviridae, genus Tobamovirus) are among the most damaging seed-borne viruses in horticultural crops, and Australia is free of many of the tobamoviruses that cause major crop losses in other countries. These viruses are extremely difficult to eradicate. Consequently, early detection of incursions is key to the control of these viruses in Australia, alongside rapid deployment of eradication and management plans. Current biosecurity surveillance methods in Australia rely on visual inspection, immunological assays, and molecular methods such as screening of imported seed lots. This study introduces a complementary approach that utilises unbiased metatranscriptomic sequencing of animal gut material to detect cryptic plant viruses circulating in nature. Using this approach, we detected five different tobamovirus circulating in Australia, including a virus thought to be exotic and three novel viruses. This unique approach highlights alternative options for surveillance/detection of exotic crop viruses.

Authors: Jackie Mahar, Jonathon C. O. Mifsud, Kate Van Brussel, Anna E. Lachenauer, Erin Harvey, Olivia M. H. Turnbull, Stefanie Bonat, Thomas M. Newsome, Annabelle Olsson, Antje Chiu-Werner, Menna E. Jones, Edward C. Holmes, Solomon Maina

Last Update: 2024-12-11 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.12.10.627875

Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.10.627875.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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