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How Bacteria Use Chemotaxis to Thrive

Learn how bacteria sense their environment and move towards nutrients.

Félix Velando, Jiawei Xing, Roberta Genova, Jean Paul Cerna-Vargas, Raquel Vázquez- Santiago, Miguel A. Matilla, Igor B. Zhulin, Tino Krell

― 7 min read


Bacteria's Secret Bacteria's Secret Navigation Skills survive. Discover how bacteria find food and
Table of Contents

Bacteria are tiny living organisms that can be found just about everywhere. They have a unique way of moving towards places they like and away from places they don’t. This movement is called chemotaxis. Think of it as bacteria taking a stroll towards a buffet when they smell food!

What Is Chemotaxis?

Chemotaxis is the directed movement of bacteria toward or away from certain chemicals in their environment. It's their way of finding food or getting away from potentially harmful substances. Imagine walking into a kitchen and following the delightful smell of cookies. Bacteria do something similar but with chemicals.

The Importance of Chemotaxis

Bacteria use chemotaxis to find nutrients and environments where they can thrive. When a bacterium detects a concentration of nutrients, it makes a dash toward them. On the flip side, if it senses harmful substances, it pushes off in the opposite direction. But that's not all! Bacteria can also sense signals from other organisms, which helps them decide where to go. This can include signals from nearby plants, animals, or even other bacteria.

How Do Bacteria Sense Their Environment?

Bacteria sense their environment using specialized proteins called Chemoreceptors. These proteins can detect different substances and inform the bacterium whether to move closer or further away. The number of chemoreceptors varies between bacteria. Some have just a few, while others have many, depending on where they live and what they need.

For example, bacteria that live in stable environments might have fewer chemoreceptors, while those in changeable or competitive environments often have many more. These chemoreceptors can recognize various substances, like sugars, amino acids, and even metal ions.

Chemotaxis and Plant Pathogens

Bacteria that infect plants have a special relationship with their surroundings thanks to chemotaxis. They use this ability to find their way into plants. Certain chemicals released by plants can attract these bacteria, helping them target entry points more effectively.

Interestingly, plant pathogens tend to have more chemoreceptors than bacteria that don’t interact with plants. This makes them better equipped to navigate the complex chemical landscape of a plant. Research shows that plant-pathogen bacteria, on average, have around twice the number of chemoreceptors compared to their non-plant counterparts.

A Closer Look at Pectobacterium atrosepticum

One bacterium that scientists study is called Pectobacterium atrosepticum. This bacterium is notorious for causing diseases like black leg and soft rot in plants. It has a strong chemotactic response due to the 36 chemoreceptors encoded in its genome. Researchers focus on understanding how these receptors work and what roles they play.

They found that one specific chemoreceptor, called ECA_RS12390, binds specifically to some important chemical compounds. By conducting various experiments, scientists discovered that this receptor particularly likes to latch onto phosphorylated C3 compounds, which are important in many biological processes.

How Are Chemoreceptors Studied?

To understand how these chemoreceptors work, scientists use various assays, including thermal-shift assays and isothermal titration calorimetry (ITC). The thermal-shift assay helps them see how stable a protein is when it binds to different ligands (small molecules). ITC measures the heat change when a ligand binds to a protein, helping scientists figure out how strongly the ligand binds.

Through these studies, they found that ECA_RS12390, also known as PacP, binds particularly well to glycerol 3-phosphate, a compound involved in both plant and bacterial metabolism. They learned that when Pectobacterium atrosepticum senses glycerol 3-phosphate, it moves towards it.

The Role of Glycerol 3-Phosphate

Glycerol 3-phosphate is a big deal in the plant world. It helps manage the plant's immune responses. When plants are attacked, they can increase production of this compound to signal to their defenses. This means that bacteria like Pectobacterium atrosepticum are not only attracted to glycerol 3-phosphate for nourishment but also to find weak points in plants, especially during stress situations.

The Discovery of New Chemoreceptors

Researchers have also discovered a new family of chemoreceptors responsible for recognizing these phosphorylated compounds. They call this family sCache_PC3. Members of this chemoreceptor family are primarily found in bacteria linked with plants, showing that these bacteria have evolved to have specialized systems to sense and respond to their plant hosts.

How Do These Chemoreceptors Work?

The members of the sCache_PC3 family work by picking up signals from certain compounds, helping bacteria make decisions about where to swim. They seem to have a preference for specific compounds, especially phosphorylated C3 compounds. This means they are picky eaters!

When researchers conducted tests, they found that these chemoreceptors are mainly present in bacteria from the γ-proteobacteria class, specifically in groups that interact with plants.

The Lifestyle of Plant Pathogens

The lifestyle of plant pathogens is pretty unique. They live off the plants they infect, finding ways to sneak in and extract nutrients. To do this successfully, they have to be good at detecting the chemical signals plants release. The presence of many chemoreceptors sharpens their skills, making them better at navigating their environment.

When they encounter a signal, they react quickly, moving in the right direction. The ability to sense these signals is often the difference between a successful infection and a missed opportunity.

Exploring the Evolution of Chemoreceptors

It’s interesting to think about how these chemoreceptors evolved. Some of them likely started by recognizing different carboxylic acids, compounds known to be important in various biological processes. Over time, their ability to detect specific phosphorylated compounds developed, leading to their current forms.

This evolution points to how adaptable bacteria can be, allowing them to thrive in varied environments and respond to the challenges they face.

Lessons Learned from Chemotaxis Research

Understanding how bacteria use chemotaxis can give us valuable insights into how they survive and thrive. Knowing the way they navigate their surroundings helps scientists find ways to manage plant diseases caused by these bacteria. If we can disrupt their ability to detect certain signals, we might be able to prevent infections.

Additionally, the discovery of the sCache_PC3 family opens up new avenues for research. Scientists can now explore how these receptors work and what other compounds might influence bacterial behavior. It could lead to developing better strategies for controlling plant pathogens.

Bacteria: The Underestimated Organisms

Bacteria often don’t get enough credit. While they can cause diseases, they also play vital roles in ecosystems, including breaking down organic materials and recycling nutrients. Their ability to sense and respond to their environment is crucial for their survival.

And let’s be honest, without bacteria, we’d have a lot more trouble in this world. They’re the original recyclers! Every time you enjoy a plate of food, just remember that bacteria might have played a role in making it possible.

Conclusion: The Ongoing Quest for Knowledge

The study of chemotaxis in bacteria is an ever-evolving field. Researchers are keen to unlock more of the secrets behind how bacteria interact with plants and their environments. As we learn more about these tiny organisms, we can better understand how to manage them in ways that benefit our ecosystems.

So next time you think about bacteria, remember they are not just lurking around waiting to make us sick. They are busy doing their thing, sniffing out nutrients, and, sometimes, plotting their next move in the grand game of plant infection!

Original Source

Title: Chemoreceptor family in plant-associated bacteria responds preferentially to the plant signal molecule glycerol 3-phosphate

Abstract: Plant pathogens and plant-associated bacteria contain about twice as many chemoreceptors as the bacterial average, indicating that chemotaxis is particularly important for bacteria-plant interactions. However, information on the corresponding chemoreceptors is limited. In this study, we identified the chemoreceptor PacP from the phytopathogen Pectobacterium atrosepticum, which exclusively recognized C3 phosphorylated compounds at its sCache ligand binding domain, mediating chemoattraction. Using a motif of PacP amino acid residues involved in ligand binding, we identified a chemoreceptor family, termed sCache_PC3, that was specific for C3 phosphorylated compounds. Isothermal titration calorimetry studies revealed that family members preferentially bound glycerol 3-phosphate, a key plant signaling molecule. Additionally, family members recognized glycerol 2-phosphate and glycolysis intermediates glyceraldehyde 3-phosphate, dihydroxyacetone phosphate and 3-phosphoglycerate. This study presents the first evidence of chemoreceptors that bind phosphorylated compounds. We show that the sCache_PC3 family has evolved from an ancestral sCache domain that respond primarily to Krebs cycle intermediates. Members of the sCache_PC3 family were mainly found in bacteria that interact with plants, including many important plant pathogens such as Brenneria, Dickeya, Musicola, Pectobacterium, and Herbaspirillum. Glycerol 3-phosphate is a signal molecule that is excreted by plants in response to stress and infection. Chemotaxis towards this molecule may thus be a means for bacteria to localize stressed plants and move to infection sites. This study lays the groundwork for investigating the functional importance of chemotaxis to phosphorylated C3 compounds in plant-bacteria interactions and virulence. Significance statementThe bacterial lifestyle has shaped the evolution of signal transduction systems, and the number and type of chemoreceptors varies greatly between bacteria occupying various ecological niches. Our understanding of the relationship between lifestyle and chemoreceptor function is limited and the discovery of a chemoreceptor family in plant-associated bacteria that primarily responds to an important plant signal molecule is a significant advancement, allowing for further studies to determine its physiological relevance. The lack of knowledge about signals recognized by bacterial receptors is currently a major challenge in microbiology. This study illustrates the potential of combining experimental ligand screening with computational ligand prediction to identify signals recognized by uncharacterized receptors.

Authors: Félix Velando, Jiawei Xing, Roberta Genova, Jean Paul Cerna-Vargas, Raquel Vázquez- Santiago, Miguel A. Matilla, Igor B. Zhulin, Tino Krell

Last Update: 2024-12-11 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.12.10.627748

Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.10.627748.full.pdf

Licence: https://creativecommons.org/licenses/by-nc/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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