Rising Cases of Early-Onset Colorectal Cancer
Study reveals genetic factors behind early-onset colorectal cancer.
Pierre Vande Perre, Ayman Al Saati, Bastien Cabarrou, Julien Plenecassagnes, Julia Gilhodes, Nils Monselet, Norbert Lignon, Thomas Filleron, Carine Villarzel, Laure Gourdain, Janick Selves, Mathilde Martinez, Edith Chipoulet, Gaëlle Collet, Ludovic Mallet, Delphine Bonnet, Rosine Guimbaud, Christine Toulas
― 6 min read
Table of Contents
- Who is Affected?
- The Genetic Component
- The Study Goals
- Patient Characteristics
- Medical History Overview
- Family History
- Gene Variants: The Search Begins
- Evaluating Genetic Patterns
- A Closer Look at Patient Data
- Dominant Transmission Hypothesis
- Recessive Patterns? Not So Much
- Oligogenic Patterns: The Non-Traditional Suspects
- The Findings and Implications
- A Summary of the Genes of Interest
- Next Steps and Conclusion
- Original Source
Early-onset colorectal cancer (EOCRC) refers to cases of colorectal cancer (CRC) diagnosed in people aged 40 or younger. Though relatively rare, the number of cases has been rising over the last 20 years. Some experts believe that screening for this type of cancer should begin at age 45 instead of the usual 50, to catch it earlier.
Who is Affected?
Most people with EOCRC are diagnosed at a later stage, which can make treatment more difficult. Interestingly, studies have shown that EOCRC is more common in men than women. Additionally, those with a family history of colorectal cancer are at a higher risk, alongside other factors such as inflammatory bowel disease, obesity, and a love for processed meats (sorry, bacon lovers!).
On the flip side, eating lots of fruits and vegetables and the occasional low-dose aspirin seems to provide some protection. It’s almost like nature's way of saying, “Eat your greens, or else!”
The Genetic Component
Around 5-10% of familial cases of colorectal cancer are linked to specific genetic issues passed down through families. To help identify these genetic factors, a specialized gene panel called the DIGE panel is used. It looks for known harmful Gene Variants that may increase the risk of developing cancer. However, it turns out that 70-80% of EOCRC cases don’t show these harmful variants.
To dig a little deeper, researchers have turned to other methods like multi-gene testing and whole exome sequencing (WES) to find what else might be going wrong at the genetic level. Unfortunately, these studies have often examined too few genes or too few patients to draw strong conclusions.
The Study Goals
The main goal of this research was to find new gene variants that might increase the risk of EOCRC. The researchers focused on a group of 87 patients who had already tested negative for the usual gene variants.
They also looked at a different group of patients with late-onset colorectal cancer (LOCRC) to compare findings. In addition, they examined whether patients with or without a family history of colorectal cancer carried different kinds of genetic variants.
Patient Characteristics
Patients in the EOCRC group had an average diagnosis age of 34, while those in the LOCRC group were diagnosed at 62.5 years. Most cases of EOCRC came from the lower part of the colon and were fairly advanced at the time of diagnosis. Interestingly, most EOCRC cases were found to be stable in terms of microsatellite instability, which helps classify them as proficient in mismatch repair. In contrast, most LOCRC cases had high levels of microsatellite instability, indicating a sort of “repair failure.”
Medical History Overview
When looking at the health history of EOCRC patients, it was found that 87.4% had no prior cancer history, except for their colorectal issue. However, some had experienced other types of cancer, which seemed to appear independent of their EOCRC diagnosis.
For instance, some patients had meltdowns with cancers like lymphoma, lung cancer, or even breast cancer. It's like a tumor party, and colorectal cancer is the uninvited guest!
Family History
Only 38.1% of EOCRC patients reported having a family history of colorectal cancer. In contrast, about 75.8% of LOCRC patients did. This discrepancy suggests that EOCRC may have different underlying factors compared to its late-onset cousin.
Gene Variants: The Search Begins
In the quest to identify new gene variants, researchers sequenced 585 potential cancer-related genes in the EOCRC patients. They found an average of 6,425 genetic variants per patient. To narrow it down, they compared the EOCRC variants with a control group of people not diagnosed with cancer.
This effort led to the identification of several significant variants, including truncating and missense variants that appeared more frequently in the EOCRC group.
Evaluating Genetic Patterns
The researchers also looked at how these variants might be inherited. They aimed to identify if the transmission of these genes followed a dominant or recessive pattern. They focused on two subgroups: patients with a family history of CRC and those without. They discovered that most of the interesting variants could be linked to various biological pathways, such as DNA Repair.
A Closer Look at Patient Data
Among the patients who had high-impact variants, many had dark Family Histories filled with cancer. Some had variants in genes linked to DNA repair, while others had variants that might hint at entirely different cancer pathways.
Who knew that a gene variant could practically shout, "I’m genetically predisposed to a cancer family reunion!"
Dominant Transmission Hypothesis
The researchers explored the idea that some gene variants might be inherited in a dominant manner. This means that just one altered copy of the gene could increase cancer risk. They found that among the EOCRC patients, certain high-impact variants were indeed overrepresented.
For example, patients with family histories of CRC tended to carry variants in several genes associated with DNA repair and other cancer-related activities.
Recessive Patterns? Not So Much
When the researchers looked for evidence of a recessive inheritance pattern—where two copies of the gene (one from each parent) would increase risk—they didn’t find much. In the EOCRC group without a family history, the data didn’t point to a recessive pattern being significant for this type of cancer.
It's almost like genetics said, "Sorry, but no recessive genes here!"
Oligogenic Patterns: The Non-Traditional Suspects
The team also explored the idea that multiple gene variants working together (oligogenic inheritance) could lead to EOCRC. They looked at pairs of variants occurring in patients without a family history but found no clear patterns.
It’s like trying to find a two-headed coin in a pile of regular ones – the odds just weren’t in their favor!
The Findings and Implications
The study ultimately highlighted the different genetic backgrounds for EOCRC compared to LOCRC and pointed to potentially important gene variants. The significant contributors were found in pathways related to DNA repair and other cellular functions.
However, it’s important to note that while the findings are promising, further studies are needed to confirm these patterns and understand their implications better.
A Summary of the Genes of Interest
In summary, researchers identified several genes that appeared to have a higher frequency of variants in EOCRC cases compared to the general population. These include:
- BRCA2: Typically linked to breast cancer but also presents in some EOCRC cases.
- CHEK2: Associated with increased cancer risk.
- RAD50: Plays a role in DNA repair.
- RECQL4: Linked to hereditary conditions but also found in EOCRC patients.
- NUTM1: Has a possible connection to cancer growth in the colon.
Next Steps and Conclusion
While this study has identified various gene variants in EOCRC patients, it also raises many questions. Continued research is essential to figure out whether these variants play a direct role in increasing the risk of early-onset colorectal cancer.
More extensive studies could help confirm these findings and potentially lead to better screening practices and treatments. After all, the sooner we tackle this issue, the better—because nobody wants cancer crashing the party at a young age!
Original Source
Title: Next generation sequencing identifies a pattern of novel germline variants in early-onset colorectal cancer
Abstract: Early-onset colorectal cancer (EOCRC) incidence is increasing rapidly worldwide. However, the majority of EOCRCs are not substantiated by germline variants in the main colorectal cancer (CRC) predisposition genes (the "DIGE" panel). To investigate a potential genetic transmission of EOCRC (dominant, recessive and oligogenic hypotheses) and thus identify potentially novel EOCRC-specific predisposition genes, we conducted an analysis of 585 cancer pathway genes on an EOCRC patient cohort (n=87 patients diagnosed at [≤] 40 years of age, DIGE-) with or without a CRC family history. By comparing this germline variant spectrum to the GnomAD cancer-free database, we identified high impact variants (HVs) in 15 genes significantly over-represented in the EOCRC cohort. Among the 32 unrelated patients with a CRC family history (i.e. with a potentially dominant transmission pattern), nine presented HVs in ten of the genes tested, four of these genes had a DNA repair function. A potentially recessive transmission of EOCRC in patients without a CRC family history cannot be supported by our results nor can an oligogenic transmission. We subsequently sequenced these 15 genes in a cohort of 82 late-onset CRCs (cancer diagnosis [≥]50 years, DIGE-) and found variants in 11 of these genes to be specific to EOCRC. To evaluate whether variants in these 11 genes would allow to specifically detect EOCRC patients, we screened our patient database (n=6482), which only contained 2% of EOCRCs (DIGE-), and identified two other EOCRC cases diagnosed after the constitution of our cohort, with individual HVs in RECQL4 and NUTM1. Altogether, we showed that 37.5% and 18.75% of heterozygous NUTM1 and RECQL4 HVs of our database were diagnosed with EOCRC. Our work has identified a pattern of germline gene variants not previously associated with EOCRC. This paves the way to addressing the contribution of these variants to EOCRC risk and oncogenesis. Author SummaryEarly-onset colorectal cancer (diagnosed at [≤] 40 years of age) is a rare disease that can in part be explained by a hereditary genetic predisposition. To identify novel gene variants potentially associated with EOCRC risk, we analysed a panel of 585 genes in 87 patients with early-onset colorectal cancer unexplained by conventional genetic tests. This first analysis highlighted 15 genes of interest. To evaluate if this genetic profile is specific to early onset, we sequenced these 15 genes in a population of late-onset colorectal cancers (diagnosed after 50 years of age). Variants in 11 of these genes were specific to the early-onset population. To assess if this genetic pattern allows to identify other early-onset cases, we screened these genes in our whole database of 6482 patients and identified two new early-onset cases. Our results need to be confirmed, and validated in larger cohorts but pave the way for future research into early-onset colorectal cancer and the possibility of improving screening or treatment options for these patients and their family members.
Authors: Pierre Vande Perre, Ayman Al Saati, Bastien Cabarrou, Julien Plenecassagnes, Julia Gilhodes, Nils Monselet, Norbert Lignon, Thomas Filleron, Carine Villarzel, Laure Gourdain, Janick Selves, Mathilde Martinez, Edith Chipoulet, Gaëlle Collet, Ludovic Mallet, Delphine Bonnet, Rosine Guimbaud, Christine Toulas
Last Update: 2024-12-12 00:00:00
Language: English
Source URL: https://www.biorxiv.org/content/10.1101/2024.12.09.627474
Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.09.627474.full.pdf
Licence: https://creativecommons.org/licenses/by/4.0/
Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.
Thank you to biorxiv for use of its open access interoperability.