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Colletotrichum: Friend or Foe in Fungi?

Exploring the dual nature of Colletotrichum fungi and their impact on plants.

Cassandra L. Ettinger, Jonathan A. Eisen, Jason E. Stajich

― 5 min read


Colletotrichum: Fungal Colletotrichum: Fungal Friend or Foe? marine plant health. Investigating Colletotrichum's role in
Table of Contents

Colletotrichum is a group of fungi known for their interesting lives that sometimes include being friendly and other times, well, not so much. These fungi can live inside plant tissues without causing harm, or they can turn mean and start causing various diseases. They are quite versatile and can be found living with a wide range of plants, showing off their ability to adapt to different environments.

The Two Faces of Colletotrichum

When it comes to their lifestyle, Colletotrichum fungi can be a bit of a drama queen. They can start by being friendly, keeping their plant hosts alive and well, but once things get tough, they switch gears and start to cause trouble. This shift from friendly to foe is called a hemibiotrophic lifestyle. During their “nice” phase, they live off of the host without causing damage, but when conditions get rough, they become necrotrophic, leading to the plant suffering and not looking too great.

The Trouble They Cause

Colletotrichum is famous for causing a type of plant disease known as Anthracnose. This disease leads to dark spots, or lesions, on plants, which don’t help them look good at all! This makes Colletotrichum one of the top ten fungal troublemakers in agriculture, affecting crops around the world.

Interestingly, while some Colletotrichum species only like to hang around certain plants, others are like party animals and can infest many different types of plants. They've been around for a long time, evolving alongside flowering plants for millions of years, starting with a preference for certain plants and then branching out.

Finding a New Home in the Water

Colletotrichum fungi aren’t just landlubbers; they've been spotted crashing the aquatic plant party as well! Recent findings show that these fungi can also live in seagrasses, such as Zostera Marina, which is a superstar in coastal ecosystems. Zostera marina helps create habitats, stabilizes sediment, and absorbs carbon from the atmosphere, so it’s a big deal in marine environments.

Living Inside Seagrasses

Scientists have been looking at how Colletotrichum interacts with Zostera marina. Studies revealed that these fungi are quite fond of hanging out on the leaves and rhizomes of the seagrass, suggesting that they might have formed a cozy relationship. However, they aren’t causing any harm yet, which raises questions about their true nature—are they just extra house guests, or do they have a darker side waiting to emerge?

The Impact of Climate Change

With climate change shaking things up in our oceans, understanding how Colletotrichum affects seagrass health becomes increasingly important. As the climate changes, seagrasses may become stressed, possibly giving the fungi an opportunity to turn from friendly tenants to unwelcome pests.

Digging Deeper: Genome Analysis

To get a clearer picture of what Colletotrichum sp. CLE4 (a specific species living in Zostera marina) is up to, scientists mapped out its genome. This is like reading the entire instruction manual of a unique creature to see what makes it tick. They found that this particular strain has a relatively small genome compared to some of its cousins.

What Makes CLE4 Special?

The genome of Colletotrichum sp. CLE4 is pretty compact, with around 12,000 genes. This means it doesn't have as much genetic material as other related fungi. Scientists found that even though it has these fewer genes, it is still highly efficient at functioning, showing a completion rate of nearly 99% in their assessments. This makes it a reliable candidate for studying how fungi adapt to different environments.

Why So Few Genes?

The smaller genome size can be a sign of “genomic streamlining.” Think of it as a fungi on a diet, cutting out the extra fluff to focus on what’s essential. This type of reduction can happen when a species adapts to a specific environment, like the marine life in which Colletotrichum sp. CLE4 finds itself.

What Did Scientists Discover?

When looking closely at the genes, scientists saw that many conserved gene families were missing in Colletotrichum sp. CLE4, suggesting it has lost some of its genetic “baggage” over time. Missing genes can include those that help with transport, metabolism, and even defenses against plant hosts. While it may seem alarming, it can also mean that the fungus has found a way to make do with less.

Who Are Its Relatives?

In the grand family tree of fungi, Colletotrichum sp. CLE4 is closest to its relative C. godetiae, which is infamous for causing disease on land plants. Surprisingly, its genome shares a high level of similarity with C. godetiae, raising eyebrows about whether it might represent a new marine strain.

The Good, The Bad, and The Fungi

So what's the verdict on Colletotrichum sp. CLE4? The findings suggest that it is likely to hang out with Zostera marina without causing any harm under normal conditions. But when things get tough—like during stress or adverse conditions—this friendly fungus might decide to turn hostile.

This ability to alternate between being beneficial and harmful is not unique to Colletotrichum sp. CLE4. Many fungi have dual capabilities where they might be helpful under the right circumstances but could also become troublesome when the situation changes.

What’s Next for Colletotrichum?

Understanding the ecology of Colletotrichum in marine environments is crucial, especially as the planet heats up. The potential for these fungi to switch between being helpful and harmful means that more research is needed. Scientists are keen to explore how other stressors, like climate change, could trigger its pathogenic side.

In conclusion, Colletotrichum is a fascinating fungal group that can act as a friend or foe, especially when it comes to its relationship with various plant hosts, including seagrasses. With ongoing research and monitoring, we can hope to better understand these tiny organisms and their impact on the environment. So next time you’re near the water or a field, remember that good ol’ Colletotrichum might just be lurking nearby, deciding whether to grace the plants with its presence or cause a bit of chaos!

Original Source

Title: Genomic streamlining of seagrass-associated Colletotrichum sp. may be related to its adaptation to a marine monocot host

Abstract: Colletotrichum spp. have a complicated history of association with land plants. Perhaps most well-known as plant pathogens for the devastating effect they can have on agricultural crops, some Colletotrichum spp. have been reported as beneficial plant endophytes. However, there have been only a handful of reports of Colletotrichum spp. isolated from aquatic plant hosts and their ecological role in the marine ecosystem is underexplored. To address this, we present the draft genome and annotation of Colletotrichum sp. CLE4, previously isolated from rhizome tissue from the seagrass Zostera marina. This genome (48.03 Mbp in length) is highly complete (BUSCO ascomycota: 98.8%) and encodes 12,015 genes, of which 5.7% are carbohydrate-active enzymes (CAZymes) and 12.6% are predicted secreted proteins. Phylogenetic placement puts Colletotrichum sp. CLE4 within the C. acutatum complex, closely related to C. godetiae. We found a 8.69% smaller genome size, 21.90% smaller gene count, and the absence of 591 conserved gene families in Colletotrichum sp. CLE4 relative to other members of the C. acutatum complex, suggesting a streamlined genome possibly linked to its specialized ecological niche in the marine ecosystem. Machine learning analyses using CATAStrophy on CAZyme domains predict this isolate to be a hemibiotroph, such that it has a biotrophic phase where the plant is kept alive during optimal environmental conditions followed by a necrotrophic phase where the fungi actively serves a pathogen. While future work is still needed to definitively tease apart the lifestyle strategy of Colletotrichum sp. CLE4, this study provides foundational insight and a high-quality genomic resource for starting to understand the evolutionary trajectory and ecological adaptations of marine-plant associated fungi.

Authors: Cassandra L. Ettinger, Jonathan A. Eisen, Jason E. Stajich

Last Update: 2024-12-17 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.12.17.629027

Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.17.629027.full.pdf

Licence: https://creativecommons.org/licenses/by-nc/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

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