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Understanding Variably Protease-Sensitive Prionopathy

A deep dive into VPSPr, a rare prion disease with unique challenges.

Yuan Lian, Keisi Kotobelli, Stacey Hall, Michael E Talkowski, Anne O’Donnell-Luria, Sonia M Vallabh, Brian S Appleby, Eric Vallabh Minikel

― 8 min read


VPSPr: A Rare Brain VPSPr: A Rare Brain Illness scientists in their quest for answers. VPSPr remains elusive, challenging
Table of Contents

Prion diseases are rare but serious neurodegenerative disorders that affect the brain and nervous system. They are caused by abnormal proteins known as prions. Unlike other diseases, prion diseases do not come from bacteria or viruses; instead, they are caused by a misfolded version of a normal protein in the brain. These diseases can lead to severe brain damage and are often fatal.

One of the well-known prion diseases is Creutzfeldt-Jakob disease (CJD). Within the group of prion diseases, there is a specific type known as Variably Protease-Sensitive Prionopathy (VPSPr). This subtype is unique and has its own characteristics that set it apart from other prion diseases.

What is Variably Protease-Sensitive Prionopathy (VPSPr)?

VPSPr is a type of prion disease that occurs in humans. It is named for how it handles certain proteins during testing. Unlike other prion diseases, VPSPr shows a lack of a certain type of prion protein in the brain, making it stand out. This absence can lead to challenges in diagnosing the disease, and it often gets misdiagnosed as other forms of dementia.

One of the main features of VPSPr is the presence of large spongy areas in the brain. These spongiform vacuoles (think of them as bubbly spots) appear more prominent than in another type of prion disease known as sporadic CJD. So, if you ever hear someone talking about "bubbly brains," they might just be discussing the signs of VPSPr!

The Challenge of Transmission and Diagnosis

Scientists have had a tough time studying VPSPr because it doesn't always transmit easily to test subjects, like mice. While other types of prion diseases can be easily passed to laboratory animals for study, VPSPr has proven to be a bit shy. However, researchers have successfully transmitted it to bank voles, which are small rodents that seem to have fewer issues with it.

When it comes to diagnosing VPSPr, a test called real-time quaking-induced conversion (RT-QuIC) can be used. This test looks for specific prion proteins in cerebrospinal fluid (the fluid surrounding our brain and spine). However, in people with VPSPr, the test is less likely to return a positive result compared to other forms of prion disease. In fact, it only shows positive results in about 70% of cases.

People with VPSPr tend to experience a slow progression of the disease compared to those with other forms of prion diseases. The average time from when symptoms start to when the patient passes away is about 2.5 years. It is often mistaken for diseases like Alzheimer’s or frontotemporal dementia because the symptoms can seem similar.

Sporadic and Genetic Prion Diseases

Most cases of prion diseases are “sporadic,” which means they appear without any known cause or family history. About 85% of prion disease cases fall into this category. The remaining cases are genetic, meaning they happen because of inherited changes in specific genes, particularly the PRNP gene. A very small number of cases come from exposure to infected materials like contaminated food or medical procedures.

Interestingly, a common genetic variation called PRNP M129V affects the risk for developing these diseases. In sporadic CJD, a specific type of protein variant is often seen. In contrast, people with VPSPr are more likely to have the 129V variant. This difference raises questions about what truly causes VPSPr.

Researchers have ruled out certain genetic issues in people with VPSPr. This means VPSPr is likely a sporadic disease, even if many patients have family histories of dementia. In a larger study, nearly half of the VPSPr patients reported some family history of neurological issues.

The Quest for Genetic Causes

In the search for answers, scientists aimed to identify any genetic reasons behind VPSPr. To do this, they looked at how often the disease occurred in families and how likely it was for patients to have relatives with similar conditions. They suspected that if a specific genetic variant was present, it might be extremely rare but would significantly increase the risk of developing VPSPr.

To conduct their study, researchers gathered DNA samples from 67 people with confirmed VPSPr. They conducted genetic sequencing on these samples and compared the results with control groups. However, no significant genetic variants were found that could explain VPSPr. This suggests that VPSPr may be sporadic, meaning it occurs by chance rather than due to inherited factors.

Family History and Possible Explanations

The observation that many VPSPr patients have family histories of dementia remains somewhat of a mystery. While it could simply be coincidental, it might also be due to factors like the longer duration of the disease or the age at which symptoms develop. It’s possible that when people hear the word “dementia,” they may recall other family members who had similar issues.

For example, since VPSPr can resemble Alzheimer’s disease or frontotemporal dementia, medical professionals might ask for thorough family histories. Family members could then remember relatives who had these more common dementias, thereby creating a connection that isn't directly tied to VPSPr.

The Study and Its Findings

In the quest to understand VPSPr, researchers used exome sequencing to see if there were any genetic variations in non-PRNP genes that could explain the disease. They looked for changes in the genetic code that might lead to the development of VPSPr. Despite their efforts, no significant findings emerged from this analysis.

They also examined possible non-coding variations around the PRNP gene. This part of the study was crucial because it considered both coding (the sections of DNA that are directly involved in creating proteins) and non-coding regions. However, they found no clear culprit that could lead to the development of VPSPr.

The researchers didn't rule out the possibility that VPSPr might have multiple genetic causes, but they didn’t find any strong evidence for that either. They suspected that many varied genetic factors could play a role in condition, but again, it didn’t seem to point to a specific cause.

The Role of PRNP M129V

One major takeaway from the research was the role of the PRNP M129V variant. It appears to be the principal genetic risk factor for VPSPr. However, the odds ratio (a way to measure how much a risk factor influences the chances of developing a disease) associated with this variant was not high enough to be considered a strong risk factor for a rare disease like prion disease.

In simpler terms, while the 129V variant increases the risk of developing VPSPr, it does not do so with the kind of strength that one might expect if it were the sole factor causing the disease.

Limitations of the Study

As with any scientific study, there were limitations. Researchers did not use whole-genome sequencing to hunt for variations in non-PRNP genes. They also recognized that various classes of genetic changes, such as larger rearrangements of DNA, might slip through their searches undetected.

Moreover, because they did not have matched control samples, they couldn't apply rigorous statistical testing to find smaller, influential variants. These factors could mean that they may not have seen the full picture when it comes to the genetic underpinnings of VPSPr.

Conclusion

In conclusion, these findings suggest that VPSPr might be genuinely sporadic. There doesn’t seem to be a significant genetic risk factor that runs in families, which means that relatives of VPSPr patients are likely not at an increased risk of developing the disease themselves. The connection seen in families could just be a fluke or attributed to other common forms of dementia.

While research on prion diseases like VPSPr is challenging, and the understanding continues to evolve, this study provides valuable insights that deepen the knowledge of these complex disorders. Who knew prion diseases could involve so much detective work? But alas, the hunt continues as scientists try to piece together this puzzling picture of the human brain.

Future Directions

Going forward, researchers will likely continue to investigate prion diseases like VPSPr. By adopting new genetic techniques and studying more cases, they hope to uncover more information that may help reveal potential causes or risk factors. They may also consider exploring less conventional genetic variants that could play a role, even if they are not coding regions.

In the meantime, prion diseases will remain a topic of intense interest. The more scientists uncover about these diseases, the more they can help patients and families. So, while VPSPr might seem like a challenge, every piece of information gleaned will bring us one step closer to understanding these mysterious conditions. Maybe one day, we’ll crack the case of the quirky prions!

Original Source

Title: Search for a genetic cause of variably protease-sensitive prionopathy

Abstract: Variably protease-sensitive prionopathy (VPSPr) is a rare, atypical subtype of prion disease in which many patients exhibit a family history of dementia. Rare protein-coding variants in PRNP, which are causal for all known forms of genetic prion disease, have been ruled out in all VPSPr cases to date, leading to suspicion that VPSPr could be caused by variants in other genes or by non-coding variation in or near PRNP. We performed exome sequencing and targeted sequencing of PRNP non-coding regions on genomic DNA from autopsy-confirmed VPSPr patients (N=67) in order to search for a possible genetic cause. Our search identified no potentially causal variants for VPSPr. The common polymorphism PRNP M129V was the largest genetic risk factor for VPSPr, with an odds ratio of 7.0. Other variants in and near PRNP exhibited association to VPSPr risk only in proportion to their linkage disequilibrium with M129V, and upstream expression quantitative trait loci showed no evidence of independent association to VPSPr risk. We cannot rule out the possibility of causal variants hiding in regions or classes of genetic variation that our search did not canvas. Nevertheless, our data support the classification of VPSPr as a sporadic prion disease. Author SummaryPrion disease is caused by misfolding of the prion protein (PrP), and can be either sporadic genetic, or acquired. Acquired cases arising from infection through dietary or medical routes are exceedingly rare today (

Authors: Yuan Lian, Keisi Kotobelli, Stacey Hall, Michael E Talkowski, Anne O’Donnell-Luria, Sonia M Vallabh, Brian S Appleby, Eric Vallabh Minikel

Last Update: 2024-12-14 00:00:00

Language: English

Source URL: https://www.medrxiv.org/content/10.1101/2024.12.12.24318867

Source PDF: https://www.medrxiv.org/content/10.1101/2024.12.12.24318867.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to medrxiv for use of its open access interoperability.

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