Sci Simple

New Science Research Articles Everyday

# Biology # Microbiology

Salmonella Surge: A Hidden Threat in Nigeria

Salmonella infections are rising in Nigeria, posing serious health risks.

Gabriel Temitope Sunmonu, Veronica O Ogunleye, Odion O. Ikhimiukor, Oluwafemi Popoola, Precious E. Osadebamwen, Aderemi Kehinde, Iruka N Okeke

― 6 min read


Salmonella Crisis in Salmonella Crisis in Nigeria concerns. Rising infections lead to urgent health
Table of Contents

Salmonella infections are a major health concern worldwide, especially in Africa. These infections can lead to serious illness and even death. In Nigeria, the situation is particularly alarming, with many people falling ill due to certain types of Salmonella. One of the most common types in this region is called Salmonella enterica, which includes the well-known strain that causes typhoid fever.

What is Salmonella?

Salmonella is a type of bacteria that can cause food poisoning and other serious illnesses. There are many types of Salmonella bacteria, but the ones that cause the most problems in humans include Salmonella Typhi, which is responsible for typhoid fever, and the non-typhoidal types, which can come from various sources like undercooked poultry or contaminated water.

The Situation in Nigeria

Nigeria faces a unique challenge with Salmonella infections. Poor sanitation, lack of clean water, and inadequate food safety measures contribute to the ongoing problem. These factors allow the bacteria to spread easily, leading to outbreaks of illness. Among the types of Salmonella found, some are more common, while others are rarely seen. For instance, Non-Typhoidal Salmonella strains are often linked to poultry, which is a common food source.

The Role of Hospitals

In Nigeria, hospitals play an important role in identifying and testing for Salmonella infections. For example, the University College Hospital in Ibadan has been part of a project to identify these bacteria since 2016. They use specific tests to differentiate between the types of Salmonella, including commercial strip biochemicals and serological methods. One concerning trend is that they have identified Salmonella Typhi as prevalent in their area, while cases of another type called S. Gallinarum were extremely rare.

An Unusual Outbreak

In 2021, an unexpected situation arose. Three samples were found that were initially thought to be S. Gallinarum, which turned out to be something different. These samples were collected from patients who lived in a neighborhood where some people owned backyard chickens. This prompted further investigation to understand whether the bacteria could have originated from these birds.

Ethical Considerations in Research

Research around these bacterial infections is done ethically. In this case, approval was obtained from an ethics committee before proceeding with studies and investigations. This ensures that all research is conducted responsibly and with respect for the individuals involved.

Identifying the Bacteria

To identify the type of Salmonella present in patients, a series of tests are conducted. Initial tests might show a certain type, but further analysis is often needed to verify the findings. The University College Hospital employs various methods, including using specific testing kits and analyzing the growth of the bacteria in different media.

Growth and Behavior of Salmonella

The way Salmonella grows can tell researchers a lot about its characteristics. By studying growth rates and patterns, scientists can determine if a strain is healthy or if it has unusual features. In this case, certain strains identified had slower growth rates compared to typical strains. It's like comparing a runner who is quick off the track to one who takes their time—both may eventually finish, but their speeds differ considerably.

The Discovery of Misidentified Strains

The surprising twist in the story was the initial misidentification of some Salmonella strains. What was thought to be S. Gallinarum turned out to actually be a type of S. Typhi instead. This mix-up highlights how important it is to conduct thorough testing and analysis. If it weren’t for further investigations, these slow-growing strains might have led to unnecessary panic regarding a possible outbreak from backyard poultry.

Testing Methods

Testing for Salmonella involves different approaches. Various kits and systems are used to help identify bacteria accurately. Among the methods utilized, the API 20E system helps gauge biochemical profiles based on how the bacteria react to different substances.

The Importance of Motility Testing

Another critical aspect of identifying Salmonella is motility testing. This tells scientists whether the bacteria can move in a specific way, which can further aid in classification. The slow-growing strains had trouble moving as expected, adding to the confusion during identification. It’s like attending a dance party but failing to keep up with the rhythm—something just doesn’t fit.

Understanding Growth Curves

When scientists test how quickly these bacteria grow, they often create growth curves. These graphs indicate how bacterial populations change over time under different conditions. Some strains grow quickly, while others take their sweet time. In this research, the slow-growing strains were lined up against faster ones, revealing marked differences.

DNA Analysis in Salmonella Research

Scientists take things a step further by analyzing the DNA of the bacteria. This helps in understanding their genetic makeup and determining how they relate to other strains. It’s akin to tracing family trees, where researchers can link different strains to their common ancestors, revealing the history behind each one.

The Role of Whole Genome Sequencing

Whole genome sequencing (WGS) technology allows researchers to analyze the complete DNA of the bacteria. This technique sheds light on the specifics of the strains and provides clarity on their relationships. It also uncovers any changes in the DNA that might be affecting growth rates or other characteristics.

Misidentification and Its Consequences

The mix-up in identifying the Salmonella types posed several challenges. Being misidentified can lead to incorrect responses and resource allocation. In this case, public health responses could have been misdirected toward controlling a threat that wasn’t there, potentially leading to unnecessary actions, like culling backyard flocks.

The Need for Accurate Identification

In areas where certain strains are rare, it becomes increasingly important to verify findings carefully. One misstep can lead to panic or misallocation of resources, especially when it comes to public health. The study emphasizes that suspected Gallinarum strains should undergo additional testing, particularly in regions where they're not commonly reported.

Slow Growth and Chromosomal Rearangements

The researchers followed up by investigating why these slow-growing strains behaved differently. It turns out that certain genetic changes could affect growth rates, leading to the observed confusion. Understanding these variations helps scientists comprehend how bacteria evolve and adapt.

Conclusion: Lessons Learned

In summary, the incident underscores the importance of thorough testing, accurate identification, and understanding the complexities of bacterial behavior. By investigating cases like this one, researchers can improve methods for diagnosing and treating infections, minimizing public health risks. Through these efforts, we better protect communities and pave the way for healthier futures.

Final Thoughts

The world of microbiology may seem complicated, but it’s vital for our health. Each discovery brings us closer to understanding these tiny organisms that can have such a big impact. So, when you think about Salmonella, remember that even the smallest bacteria can have an endless story hiding behind them, and it’s up to researchers to unravel that tale—one test at a time!

Original Source

Title: Slow-growing Salmonella enterica Typhi mis-identified as Salmonella Gallinarum in Ibadan, Nigeria

Abstract: Salmonella enterica serovar Typhi is endemic in Nigeria where S. Gallinarum is rarely reported. Probable S. Gallinarum was blood-cultured from three Ibadan patients within 10-days leading to suspicion of an outbreak. All three isolates were re-identified using VITEK-2, whole genome sequenced on Illumina and Oxford Nanopore platforms and confirmed as S. Typhi genotype 3.1.1. Two isolates from the same household had no single nucleotide polymorphisms, suggesting a point-source, but the third was an independent infection event. The isolates formed small colonies, were negative for motility by hanging drop method, and in Sulphide-Indole-Motility medium at 24h, but positive after 48h incubation. Hybrid genome assemblies revealed chromosomal fragment arrangements with imbalances on either side of ori and ter, which has been shown to slow S. Typhi growth. Suspected S. Gallinarum isolates in typhoid endemic areas should be evaluated biochemically and for motility after extended incubation, and verified by serological or molecular methods. Main contributions of the researchO_LIThis study demonstrates that slow-growing Salmonella Typhi can be mis-identified as S. Gallinarum in resource-limited endemic countries. C_LIO_LIExtended motility testing and confirmatory testing can avoid S. Gallinarum miss-calls. C_LIO_LIThe genetic basis for slow-growth may be chromosomal rearrangements at rrn operons, which are known to occur in S. Typhi C_LI

Authors: Gabriel Temitope Sunmonu, Veronica O Ogunleye, Odion O. Ikhimiukor, Oluwafemi Popoola, Precious E. Osadebamwen, Aderemi Kehinde, Iruka N Okeke

Last Update: 2024-12-25 00:00:00

Language: English

Source URL: https://www.biorxiv.org/content/10.1101/2024.12.24.630237

Source PDF: https://www.biorxiv.org/content/10.1101/2024.12.24.630237.full.pdf

Licence: https://creativecommons.org/licenses/by/4.0/

Changes: This summary was created with assistance from AI and may have inaccuracies. For accurate information, please refer to the original source documents linked here.

Thank you to biorxiv for use of its open access interoperability.

More from authors

Similar Articles